RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ITGA4P13612 1032 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 TNFSF9P41273 254 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 GRM5P41594 1212 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 CASP4P49662 377 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 EPHB4P54760 987 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 FAM189BP81408 668 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 IQCB1Q15051 598 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 TMEM240Q5SV17 173 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 CRELD2Q6UXH1 353 aaPredicted RBP13.33□□□□□ -0.28
SDC1-206ENST00000482879 LRRC55Q6ZSA7 311 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 OTOP2Q7RTS6 562 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 FILIP1Q7Z7B0 1213 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 MRPL10Q7Z7H8 261 aaKnown RBP13.33□□□□□ -0.28
SDC1-206ENST00000482879 ECHDC2Q86YB7 292 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 DHX40Q8IX18 779 aaKnown RBP13.33□□□□□ -0.28
SDC1-206ENST00000482879 TMEM192Q8IY95 271 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 HACE1Q8IYU2 909 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 RNF169Q8NCN4 708 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 SMG8Q8ND04 991 aaKnown RBP13.33□□□□□ -0.28
SDC1-206ENST00000482879 FAM200AQ8TCP9 573 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 ACAP3Q96P50 834 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 RNF39Q9H2S5 420 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 NXF3Q9H4D5 531 aaKnown RBP13.33□□□□□ -0.28
SDC1-206ENST00000482879 RPF1Q9H9Y2 349 aaKnown RBP13.33□□□□□ -0.28
SDC1-206ENST00000482879 SNTG2Q9NY99 539 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 PARP2Q9UGN5 583 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 NFE2L3Q9Y4A8 694 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.32□□□□□ -0.28
SDC1-206ENST00000482879 IKBKBO14920 756 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 FAM189A1O60320 539 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 AKAP3O75969 853 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 BAIAP3O94812 1187 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 EPB41P11171 864 aaKnown RBP13.32□□□□□ -0.28
SDC1-206ENST00000482879 AKAP5P24588 427 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 PSMC2P35998 433 aaKnown RBP13.32□□□□□ -0.28
SDC1-206ENST00000482879 MAGEA10P43363 369 aaPredicted RBP13.32□□□□□ -0.28
SDC1-206ENST00000482879 NCAPHQ15003 741 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 SNRNP35Q16560 246 aaKnown RBP13.32□□□□□ -0.28
SDC1-206ENST00000482879 PSRC1Q6PGN9 363 aaPredicted RBP13.32□□□□□ -0.28
SDC1-206ENST00000482879 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.32□□□□□ -0.28
SDC1-206ENST00000482879 CBWD2Q8IUF1 395 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 CREBRFQ8IUR6 639 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 FAM186BQ8IYM0 893 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 LPPQ93052 612 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 PGBD4Q96DM1 585 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 FAM212AQ96EL1 285 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 FBXL18Q96ME1 805 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.32□□□□□ -0.28
SDC1-206ENST00000482879 MKNK1Q9BUB5 465 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 THAP9Q9H5L6 903 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 SAMSN1Q9NSI8 373 aaKnown RBP13.32□□□□□ -0.28
SDC1-206ENST00000482879 FANCLQ9NW38 375 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 CPSF3Q9UKF6 684 aaKnown RBP13.32□□□□□ -0.28
SDC1-206ENST00000482879 LRFN2Q9ULH4 789 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 PCDHB7Q9Y5E2 793 aa13.32□□□□□ -0.28
SDC1-206ENST00000482879 TDRD15B5MCY1 1934 aaKnown RBP13.31□□□□□ -0.28
SDC1-206ENST00000482879 ZBBXA8MT70 800 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 SLC16A3O15427 465 aaKnown RBP13.31□□□□□ -0.28
SDC1-206ENST00000482879 RECQL4O94761 1208 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 GNA14O95837 355 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 EOMESO95936 686 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 ADRB2P07550 413 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 CXCL8P10145 99 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 ATF7P17544 494 aaPredicted RBP13.31□□□□□ -0.28
SDC1-206ENST00000482879 YARSP54577 528 aaKnown RBP13.31□□□□□ -0.28
SDC1-206ENST00000482879 ENOX2Q16206 610 aaKnown RBP13.31□□□□□ -0.28
SDC1-206ENST00000482879 CCDC40Q4G0X9 1142 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 AGMOQ6ZNB7 445 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 ZNF598Q86UK7 904 aaKnown RBP13.31□□□□□ -0.28
SDC1-206ENST00000482879 LUZP1Q86V48 1076 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 GAS2L3Q86XJ1 694 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 FAM114A1Q8IWE2 563 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 RNF214Q8ND24 703 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 ELAC1Q9H777 363 aaKnown RBP13.31□□□□□ -0.28
SDC1-206ENST00000482879 RNF216Q9NWF9 866 aaPredicted RBP13.31□□□□□ -0.28
SDC1-206ENST00000482879 TMEM161AQ9NX61 479 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 RBAKQ9NYW8 714 aaPredicted RBP13.31□□□□□ -0.28
SDC1-206ENST00000482879 KLK14Q9P0G3 267 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 MAGEC2Q9UBF1 373 aaPredicted RBP13.31□□□□□ -0.28
SDC1-206ENST00000482879 PDCD11Q14690 1871 aaKnown RBP13.31□□□□□ -0.28
SDC1-206ENST00000482879 RALGAPA2Q2PPJ7 1873 aa13.31□□□□□ -0.28
SDC1-206ENST00000482879 MEIS3P2A8K0S8 358 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 H0YGN5 161 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 GOLGA6L19H0YKK7 550 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 MAPK13O15264 365 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 AMHP03971 560 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 KRT13P13646 458 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 KCNJ6P48051 423 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 WDR5P61964 334 aaKnown RBP13.3□□□□□ -0.28
SDC1-206ENST00000482879 POU5F1Q01860 360 aaKnown RBP13.3□□□□□ -0.28
SDC1-206ENST00000482879 CYP24A1Q07973 514 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 SLC10A6Q3KNW5 377 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 HSP90AA4PQ58FG1 418 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 FRMD5Q7Z6J6 570 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 IRF2BP1Q8IU81 584 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 NPAS4Q8IUM7 802 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 BRSK2Q8IWQ3 736 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 HERVK_113Q902F9 699 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 CNOT6LQ96LI5 555 aaKnown RBP13.3□□□□□ -0.28
SDC1-206ENST00000482879 MFSD14AQ96MC6 490 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms