RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	NCBP1	Q09161	790 aa	Known RBP	12.17	□□□□□ -0.46
APTX-223	ENST00000479656	LMBRD2	Q68DH5	695 aa	Predicted RBP	12.17	□□□□□ -0.46
APTX-223	ENST00000479656	ZSCAN30	Q86W11	494 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	ZNF516	Q92618	1163 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	FAM212A	Q96EL1	285 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	TMEM117	Q9H0C3	514 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	ABHD10	Q9NUJ1	306 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	GCNT4	Q9P109	453 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	CPSF3	Q9UKF6	684 aa	Known RBP	12.17	□□□□□ -0.46
APTX-223	ENST00000479656	CDY2A	Q9Y6F7	541 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	CEP350	Q5VT06	3117 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656		A0A1W2PQJ5	194 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656		M0QZ92	97 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	STX10	O60499	249 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	LRRN2	O75325	713 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	CHRNA1	P02708	482 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	CTSH	P09668	335 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	TNNI1	P19237	187 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	LBX1	P52954	281 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	POLR2F	P61218	127 aa	Known RBP	12.17	□□□□□ -0.46
APTX-223	ENST00000479656	HSP90AA2P	Q14568	343 aa	Predicted RBP	12.17	□□□□□ -0.46
APTX-223	ENST00000479656	USP37	Q86T82	979 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	TMEM192	Q8IY95	271 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	ZNF710	Q8N1W2	664 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	EHBP1	Q8NDI1	1231 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	OR8K1	Q8NGG5	319 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	FAM84A	Q96KN4	292 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	PANX2	Q96RD6	677 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	FNBP1	Q96RU3	617 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	BAG1	Q99933	345 aa	Predicted RBP	12.17	□□□□□ -0.46
APTX-223	ENST00000479656	NLRC4	Q9NPP4	1024 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	PHF24	Q9UPV7	400 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	NOD1	Q9Y239	953 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	TRPV2	Q9Y5S1	764 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	P4HA2	O15460	535 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	N4BP1	O75113	896 aa	Known RBP	12.16	□□□□□ -0.46
APTX-223	ENST00000479656	MCF2	P10911	925 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	THPO	P40225	353 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	CLDN10	P78369	228 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	ZBED6	P86452	979 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	ENPEP	Q07075	957 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	CETN1	Q12798	172 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	KLHDC7A	Q5VTJ3	777 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	KRT39	Q6A163	491 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	SV2A	Q7L0J3	742 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	CACNA2D4	Q7Z3S7	1137 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	CTU1	Q7Z7A3	348 aa	Known RBP	12.16	□□□□□ -0.46
APTX-223	ENST00000479656	RPAIN	Q86UA6	219 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	TMEM139	Q8IV31	216 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	BRSK2	Q8IWQ3	736 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	SLC43A3	Q8NBI5	491 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	ZNF397	Q8NF99	534 aa	Predicted RBP	12.16	□□□□□ -0.46
APTX-223	ENST00000479656	LMO3	Q8TAP4	145 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	IQCD	Q96DY2	449 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	CCDC51	Q96ER9	411 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	TRPV6	Q9H1D0	765 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	GAN	Q9H2C0	597 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	TMEM8A	Q9HCN3	771 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	SIX2	Q9NPC8	291 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	PLCB1	Q9NQ66	1216 aa		12.16	□□□□□ -0.46
APTX-223	ENST00000479656	NOC2L	Q9Y3T9	749 aa	Known RBP	12.16	□□□□□ -0.46
APTX-223	ENST00000479656		A0A0U1RQG5	324 aa	Predicted RBP	12.15	□□□□□ -0.46
APTX-223	ENST00000479656	ESPN	B1AK53	854 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	ARVCF	O00192	962 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	DNM1L	O00429	736 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	STAG3L1	P0CL83	205 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	GTF2H1	P32780	548 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	MXI1	P50539	228 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	PTK7	Q13308	1070 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	PCBP1	Q15365	356 aa	Known RBP eCLIP	12.15	□□□□□ -0.46
APTX-223	ENST00000479656	GJB7	Q6PEY0	223 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	TRIM65	Q6PJ69	517 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	RRAGA	Q7L523	313 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	BAP1	Q92560	729 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	DHX38	Q92620	1227 aa	Known RBP	12.15	□□□□□ -0.46
APTX-223	ENST00000479656	ADPGK	Q9BRR6	497 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	EDEM3	Q9BZQ6	932 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	INTS2	Q9H0H0	1204 aa	Known RBP	12.15	□□□□□ -0.46
APTX-223	ENST00000479656	CEP72	Q9P209	647 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	OGDHL	Q9ULD0	1010 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	PTPRJ	Q12913	1337 aa		12.15	□□□□□ -0.46
APTX-223	ENST00000479656	PMM2	O15305	246 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	NRDC	O43847	1150 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	B4GALT4	O60513	344 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	NPTXR	O95502	500 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	C4BPA	P04003	597 aa	Known RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	UCHL3	P15374	230 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	MSN	P26038	577 aa	Known RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	MGAT3	Q09327	533 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	ENOX2	Q16206	610 aa	Known RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	TSR1	Q2NL82	804 aa	Known RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	EPC2	Q52LR7	807 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	NOTUM	Q6P988	496 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	FBXO46	Q6PJ61	603 aa	Predicted RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	FAM228A	Q86W67	206 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	CCDC112	Q8NEF3	446 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	SEMA4D	Q92854	862 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	DNAJC7	Q99615	494 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	EIF2A	Q9BY44	585 aa	Known RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	OSBPL7	Q9BZF2	842 aa		12.14	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms