RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ATP6V0A1Q93050 837 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 ANO3Q9BYT9 981 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 NKX2-4Q9H2Z4 354 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 PPP4R2Q9NY27 417 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 ADAMTS6Q9UKP5 1117 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 YBX2Q9Y2T7 364 aaKnown RBP7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 UBIAD1Q9Y5Z9 338 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 WDR81Q562E7 1941 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 LOXHD1Q8IVV2 1947 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 CHD9Q3L8U1 2897 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 EMSYQ7Z589 1322 aa7.75□□□□□ -1.17
CCDC88A-213ENST00000476903 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 ABHD14A-ACY1A0A1B0GW23 586 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 ESYT2A0FGR8 921 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 KIF28PB7ZC32 967 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 NBNO60934 754 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 EFCAB14O75071 495 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 ATP9AO75110 1047 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 CAND2O75155 1236 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 CXCL10P02778 98 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 RNASE1P07998 156 aaKnown RBP7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 SCG2P13521 617 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 FUT4P22083 530 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 TCF7P36402 384 aaPredicted RBP7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 THPOP40225 353 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 AKAP17AQ02040 695 aaKnown RBP7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 DNM1Q05193 864 aaKnown RBP7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 MESP2Q0VG99 397 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 GPNMBQ14956 572 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 ZNF618Q5T7W0 954 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 ERICH6BQ5W0A0 696 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 MCTP2Q6DN12 878 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 RUFY3Q7L099 469 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 ASAP3Q8TDY4 903 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 CCDC12Q8WUD4 166 aaPredicted RBP7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 SEPT1Q8WYJ6 367 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 MXRA8Q9BRK3 442 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 SDF4Q9BRK5 362 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 AGXT2Q9BYV1 514 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 PRDM12Q9H4Q4 367 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 MBNL3Q9NUK0 354 aaKnown RBP7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 ERAP1Q9NZ08 941 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 NRCAMQ92823 1304 aa7.74□□□□□ -1.17
CCDC88A-213ENST00000476903 SIP14410 1827 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 METTL12A8MUP2 240 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 RSPH10B2B2RC85 870 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 TREHO43280 583 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 PRPF3O43395 683 aaKnown RBP7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 RSPH10BP0C881 870 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 MYOGP15173 224 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 RAB6AP20340 208 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 GNA11P29992 359 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 ZNF76P36508 570 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 SREBF1P36956 1147 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 EVCP57679 992 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 WDR5P61964 334 aaKnown RBP7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 ARHGAP4P98171 946 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 ZNF423Q2M1K9 1284 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 CEP55Q53EZ4 464 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 NIPA1Q7RTP0 329 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 HERC6Q8IVU3 1022 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 TMEM40Q8WWA1 233 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 FAM168AQ92567 244 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 GLG1Q92896 1179 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 PGBD1Q96JS3 809 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 RNF26Q9BY78 433 aaPredicted RBP7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 ZMYND12Q9H0C1 365 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 RNPEPQ9H4A4 650 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 SMARCAD1Q9H4L7 1026 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 AZI2Q9H6S1 392 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 C6orf50Q9HD87 102 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 LATS2Q9NRM7 1088 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 KCNH7Q9NS40 1196 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 SETD4Q9NVD3 440 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 TMEM260Q9NX78 707 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 SLC9A2Q9UBY0 812 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 TELO2Q9Y4R8 837 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 CYP46A1Q9Y6A2 500 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 NFASCO94856 1347 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 EVPLQ92817 2033 aa7.73□□□□□ -1.17
CCDC88A-213ENST00000476903 GSTTP1A0A1W2PQM5 241 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 MEIS1O00470 390 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 TNFRSF21O75509 655 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 CA3P07451 260 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 CD8BP10966 210 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 IFNAR1P17181 557 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 MAOBP27338 520 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 MARK3P27448 753 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 MZF1P28698 734 aaPredicted RBP7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 PDIA3P30101 505 aaKnown RBP7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 ADAM17P78536 824 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 PPFIA1Q13136 1202 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 TOB2Q14106 344 aaPredicted RBP7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 PKN1Q16512 942 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 C8orf34Q49A92 452 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 JAKMIP3Q5VZ66 844 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 TAF2Q6P1X5 1199 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 RSPH3Q86UC2 560 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 REXO1Q8N1G1 1221 aaKnown RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms