RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ZSCAN31Q96LW9 406 aaPredicted RBP13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 APOL6Q9BWW8 343 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 TRIM6Q9C030 488 aaPredicted RBP13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PLEKHA4Q9H4M7 779 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 KCNK12Q9HB15 430 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 KLK14Q9P0G3 267 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 NOTCH4Q99466 2003 aa13.55□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 TGM5O43548 720 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 GALR2O43603 387 aaPredicted RBP13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 NR1I2O75469 434 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 RFPL2O75678 378 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 GLUD1P00367 558 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 NPR3P17342 541 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 NAMPTP43490 491 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 RBM25P49756 843 aaKnown RBP13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 HMGN5P82970 282 aaKnown RBP13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 TUSC3Q13454 348 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 TTC38Q5R3I4 469 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 NOSTRINQ8IVI9 506 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 TMEM105Q8N8V8 129 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ERMNQ8TAM6 284 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 B3GALT6Q96L58 329 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CCDC43Q96MW1 224 aaKnown RBP13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 NT5C3AQ9H0P0 336 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 C2orf40Q9H1Z8 148 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 IGSF9Q9P2J2 1179 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 EPS15L1Q9UBC2 864 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CACNG4Q9UBN1 327 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 DPP7Q9UHL4 492 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 USP20Q9Y2K6 914 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 FAM186AA6NE01 2351 aa13.54□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PROB1E7EW31 1015 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 N4BP3O15049 544 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CLCN5P51795 746 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 TDGQ13569 410 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 HSP90AA2PQ14568 343 aaPredicted RBP13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 MAPK6Q16659 721 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 RTP2Q5QGT7 225 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 NT5DC1Q5TFE4 455 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 EEF1DP3Q658K8 133 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ASTLQ6HA08 431 aaPredicted RBP13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CD300LGQ6UXG3 332 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ZBTB8OSQ8IWT0 167 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 RABGGTAQ92696 567 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 CLSTN3Q9BQT9 956 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 IRF2BPLQ9H1B7 796 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 SH2B1Q9NRF2 756 aaPredicted RBP13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ZDHHC7Q9NXF8 308 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 SNTG2Q9NY99 539 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 PARP2Q9UGN5 583 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 DUSP12Q9UNI6 340 aa13.53□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 WDR87Q6ZQQ6 2873 aa13.52□□□□□ -0.24
MSH5-SAPCD1-205ENST00000476085 ARHGEF35A5YM69 484 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 TADA2AO75478 443 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RECQL4O94761 1208 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PRKCBP05771 671 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 THP07101 528 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SPATA31D3P0C874 917 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 IGFBP6P24592 240 aaPredicted RBP13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PRPF4BQ13523 1007 aaKnown RBP13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 NBR1Q14596 966 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 IL17AQ16552 155 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 XKR4Q5GH76 650 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CWF19L1Q69YN2 538 aaKnown RBP13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ALKAL1Q6UXT8 129 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SPATA31D4Q6ZUB0 917 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PALB2Q86YC2 1186 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 LNX1Q8TBB1 728 aaPredicted RBP13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RIN2Q8WYP3 895 aaPredicted RBP13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PIK3R5Q8WYR1 880 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 MYADMQ96S97 322 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PRKD2Q9BZL6 878 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 BHMT2Q9H2M3 363 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 POLD4Q9HCU8 107 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PTPRHQ9HD43 1115 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CLUHO75153 1309 aa13.52□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CITO14578 2027 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SF3B1O75533 1304 aaKnown RBP eCLIP13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 TMEM189-UBE2V1I3L0A0 370 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ZMYND10O75800 440 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 KIF4AO95239 1232 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RPL17P18621 184 aaKnown RBP13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 EFNA5P52803 228 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CREMQ03060 361 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PTGDRQ13258 359 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PPP2R5AQ15172 486 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 C8orf34Q49A92 452 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 HAUS3Q68CZ6 603 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PRSS55Q6UWB4 352 aaPredicted RBP13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 TAS1R3Q7RTX0 852 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 DAW1Q8N136 415 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SLC44A3Q8N4M1 653 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SMG7Q92540 1137 aaKnown RBP13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 KIFAP3Q92845 792 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 NXPE3Q969Y0 559 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PPP1R10Q96QC0 940 aaKnown RBP13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 TTPALQ9BTX7 342 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 LRWD1Q9UFC0 647 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 FBXW11Q9UKB1 542 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms