RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ATRNL1Q5VV63 1379 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 DNAJC9-AS1A6NH13 148 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 NRP2O60462 931 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 KPNA6O60684 536 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 CDKL5O76039 1030 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 TERF2Q15554 542 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 LMBR1LQ6UX01 489 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 C1QL2Q7Z5L3 287 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 SH2D3CQ8N5H7 860 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 ZNF610Q8N9Z0 462 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 SMC1BQ8NDV3 1235 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 OR56A1Q8NGH5 318 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 Q96MF0 132 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 CDC5LQ99459 802 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 SPATA5L1Q9BVQ7 753 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 POGKQ9P215 609 aa5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 MAGEC2Q9UBF1 373 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-212ENST00000474059 WIPF3A6NGB9 483 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 SPATA31D3P0C874 917 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 FDXRP22570 491 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 CTSSP25774 331 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 FLT3P36888 993 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 RARRES1P49788 294 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 OCA2Q04671 838 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 SEPT7Q16181 437 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 ERCC6LQ2NKX8 1250 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 SPATA31D4Q6ZUB0 917 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 GLB1L2Q8IW92 636 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 RHOT2Q8IXI1 618 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 REPS2Q8NFH8 660 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 PMFBP1Q8TBY8 1022 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 PDLIM2Q96JY6 352 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 SPTLC3Q9NUV7 552 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 TMEM260Q9NX78 707 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 CDK11AQ9UQ88 783 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 ZKSCAN5Q9Y2L8 839 aa5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 CCDC9Q9Y3X0 531 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-212ENST00000474059 CXorf49A8MYA2 514 aaPredicted RBP5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 PRAMEF4O60810 478 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 ASMTLO95671 621 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 MGAT1P26572 445 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 CANXP27824 592 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 NRG3P56975 720 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 MEF2AQ02078 507 aaPredicted RBP5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 PCBP1Q15365 356 aaKnown RBP eCLIP5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 PITRM1Q5JRX3 1037 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 Q6ZNX1 250 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 TMEM132CQ8N3T6 1108 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 SH3TC2Q8TF17 1288 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 SCARB1Q8WTV0 552 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 SLC9A6Q92581 669 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 NELL1Q92832 810 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 NACC2Q96BF6 587 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 ANO3Q9BYT9 981 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 RNF7Q9UBF6 113 aa5.03□□□□□ -1.6
CCDC88A-212ENST00000474059 GAS7O60861 476 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 FOSP01100 380 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 HLA-DOAP06340 250 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 FLT3LGP49771 235 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 EPHA10Q5JZY3 1008 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 MAPKAPK5Q8IW41 473 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 TRMT2AQ8IZ69 625 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 C9orf106Q8NAJ2 232 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 CAGE1Q8TC20 777 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 ZSWIM1Q9BR11 485 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 DUSP26Q9BV47 211 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 OSBPL2Q9H1P3 480 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 IFT57Q9NWB7 429 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 CDY2AQ9Y6F7 541 aa5.02□□□□□ -1.61
CCDC88A-212ENST00000474059 XPAP23025 273 aaPredicted RBP5.01□□□□□ -1.61
CCDC88A-212ENST00000474059 MST1LQ2TV78 715 aa5.01□□□□□ -1.61
CCDC88A-212ENST00000474059 ARMC6Q6NXE6 501 aa5.01□□□□□ -1.61
CCDC88A-212ENST00000474059 ARHGEF25Q86VW2 580 aa5.01□□□□□ -1.61
CCDC88A-212ENST00000474059 ZNF384Q8TF68 577 aa5.01□□□□□ -1.61
CCDC88A-212ENST00000474059 C1QTNF7Q9BXJ2 289 aa5.01□□□□□ -1.61
CCDC88A-212ENST00000474059 KLK15Q9H2R5 256 aa5.01□□□□□ -1.61
CCDC88A-212ENST00000474059 KCTD10Q9H3F6 313 aa5.01□□□□□ -1.61
CCDC88A-212ENST00000474059 RNF181Q9P0P0 153 aa5.01□□□□□ -1.61
CCDC88A-212ENST00000474059 PJA2O43164 708 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 PRSS23O95084 383 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 LPLP06858 475 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 CRHR1P34998 444 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 KPNA1P52294 538 aaPredicted RBP5□□□□□ -1.61
CCDC88A-212ENST00000474059 CACNA2D1P54289 1103 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 CLRN1P58418 232 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 C21orf62-AS1Q17RA5 79 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 FAM47AQ5JRC9 791 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 ATXN7L2Q5T6C5 722 aaPredicted RBP5□□□□□ -1.61
CCDC88A-212ENST00000474059 MICALCLQ6ZW33 695 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 OR14C36Q8NHC7 312 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 ZFP28Q8NHY6 868 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 ZNF778Q96MU6 729 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 GPR101Q96P66 508 aaPredicted RBP5□□□□□ -1.61
CCDC88A-212ENST00000474059 ALOXE3Q9BYJ1 711 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 WNT8AQ9H1J5 351 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 TMEM74BQ9NUR3 256 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 SIK3Q9Y2K2 1263 aa5□□□□□ -1.61
CCDC88A-212ENST00000474059 ZFPL1O95159 310 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 GASTP01350 101 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 ALOX15P16050 662 aaPredicted RBP4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms