RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 USP49Q70CQ1 688 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 GPBP1Q86WP2 473 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 HSCBQ8IWL3 235 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 RASSF8Q8NHQ8 419 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 SPIRE2Q8WWL2 714 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 RAD54LQ92698 747 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 EPSTI1Q96J88 318 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 USP28Q96RU2 1077 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 PAAF1Q9BRP4 392 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 NTPCRQ9BSD7 190 aaKnown RBP19.71■□□□□ 0.75
UPF3A-203ENST00000474056 TARS2Q9BW92 718 aaKnown RBP19.71■□□□□ 0.75
UPF3A-203ENST00000474056 MRPL4Q9BYD3 311 aaKnown RBP19.71■□□□□ 0.75
UPF3A-203ENST00000474056 CCSER1Q9C0I3 900 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 CDT1Q9H211 546 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 S1PR5Q9H228 398 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 PTPRHQ9HD43 1115 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 STK39Q9UEW8 545 aa19.71■□□□□ 0.75
UPF3A-203ENST00000474056 FBXO2Q9UK22 296 aaPredicted RBP19.71■□□□□ 0.75
UPF3A-203ENST00000474056 RBM19Q9Y4C8 960 aaKnown RBP19.71■□□□□ 0.75
UPF3A-203ENST00000474056 CASTOR2A6NHX0 329 aa19.7■□□□□ 0.74
UPF3A-203ENST00000474056 LILRB3O75022 631 aa19.7■□□□□ 0.74
UPF3A-203ENST00000474056 EPCAMP16422 314 aa19.7■□□□□ 0.74
UPF3A-203ENST00000474056 NAB2Q15742 525 aa19.7■□□□□ 0.74
UPF3A-203ENST00000474056 ZNF568Q3ZCX4 644 aa19.7■□□□□ 0.74
UPF3A-203ENST00000474056 TMEM87AQ8NBN3 555 aa19.7■□□□□ 0.74
UPF3A-203ENST00000474056 TMEM161BQ8NDZ6 487 aa19.7■□□□□ 0.74
UPF3A-203ENST00000474056 SUSD6Q92537 303 aa19.7■□□□□ 0.74
UPF3A-203ENST00000474056 CLIC6Q96NY7 704 aa19.7■□□□□ 0.74
UPF3A-203ENST00000474056 REEP2Q9BRK0 252 aa19.7■□□□□ 0.74
UPF3A-203ENST00000474056 COLEC11Q9BWP8 271 aa19.7■□□□□ 0.74
UPF3A-203ENST00000474056 DENND4AQ7Z401 1863 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 C2CD2LO14523 706 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 ABLIM1O14639 778 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 NR1I2O75469 434 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 URODP06132 367 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 THP07101 528 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 PROZP22891 400 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 SMTNP53814 917 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 TUSC3Q13454 348 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 FUT10Q6P4F1 479 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 SLC22A17Q8WUG5 538 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 LARP4BQ92615 738 aaKnown RBP19.69■□□□□ 0.74
UPF3A-203ENST00000474056 KLHL5Q96PQ7 755 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 GPR62Q9BZJ7 368 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 ZSCAN16Q9H4T2 348 aaPredicted RBP19.69■□□□□ 0.74
UPF3A-203ENST00000474056 MRPL17Q9NRX2 175 aaKnown RBP19.69■□□□□ 0.74
UPF3A-203ENST00000474056 CDH22Q9UJ99 828 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 ADAM28Q9UKQ2 775 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 ODF2LQ9ULJ1 636 aa19.69■□□□□ 0.74
UPF3A-203ENST00000474056 SRPRBQ9Y5M8 271 aaKnown RBP19.69■□□□□ 0.74
UPF3A-203ENST00000474056 MYO10Q9HD67 2058 aa19.68■□□□□ 0.74
UPF3A-203ENST00000474056 CNPP09543 421 aaKnown RBP19.68■□□□□ 0.74
UPF3A-203ENST00000474056 MAPTP10636 758 aaKnown RBP19.68■□□□□ 0.74
UPF3A-203ENST00000474056 HOXB8P17481 243 aaPredicted RBP19.68■□□□□ 0.74
UPF3A-203ENST00000474056 GLUD2P49448 558 aa19.68■□□□□ 0.74
UPF3A-203ENST00000474056 NCKAP1LP55160 1127 aa19.68■□□□□ 0.74
UPF3A-203ENST00000474056 GLRA4Q5JXX5 417 aa19.68■□□□□ 0.74
UPF3A-203ENST00000474056 APBB1IPQ7Z5R6 666 aaPredicted RBP19.68■□□□□ 0.74
UPF3A-203ENST00000474056 ZBTB33Q86T24 672 aa19.68■□□□□ 0.74
UPF3A-203ENST00000474056 HASPINQ8TF76 798 aa19.68■□□□□ 0.74
UPF3A-203ENST00000474056 ZBTB45Q96K62 511 aaPredicted RBP19.68■□□□□ 0.74
UPF3A-203ENST00000474056 POP1Q99575 1024 aaKnown RBP19.68■□□□□ 0.74
UPF3A-203ENST00000474056 LARSQ9P2J5 1176 aaKnown RBP19.68■□□□□ 0.74
UPF3A-203ENST00000474056 PI4K2BG5E9Z4 385 aa19.67■□□□□ 0.74
UPF3A-203ENST00000474056 HARSP12081 509 aaKnown RBP19.67■□□□□ 0.74
UPF3A-203ENST00000474056 GRM5P41594 1212 aa19.67■□□□□ 0.74
UPF3A-203ENST00000474056 OSTNP61366 133 aa19.67■□□□□ 0.74
UPF3A-203ENST00000474056 DSG1Q02413 1049 aa19.67■□□□□ 0.74
UPF3A-203ENST00000474056 STRN3Q13033 797 aa19.67■□□□□ 0.74
UPF3A-203ENST00000474056 HSP90AA2PQ14568 343 aaPredicted RBP19.67■□□□□ 0.74
UPF3A-203ENST00000474056 KIAA0319Q5VV43 1072 aa19.67■□□□□ 0.74
UPF3A-203ENST00000474056 MPZL3Q6UWV2 235 aa19.67■□□□□ 0.74
UPF3A-203ENST00000474056 C12orf76Q8N812 135 aaPredicted RBP19.67■□□□□ 0.74
UPF3A-203ENST00000474056 B3GALT6Q96L58 329 aa19.67■□□□□ 0.74
UPF3A-203ENST00000474056 PHF7Q9BWX1 381 aaPredicted RBP19.67■□□□□ 0.74
UPF3A-203ENST00000474056 EMILIN2Q9BXX0 1053 aa19.67■□□□□ 0.74
UPF3A-203ENST00000474056 DAXXQ9UER7 740 aaPredicted RBP19.67■□□□□ 0.74
UPF3A-203ENST00000474056 KCNG1Q9UIX4 513 aa19.67■□□□□ 0.74
UPF3A-203ENST00000474056 FAM13AO94988 1023 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 KIF4AO95239 1232 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 MCF2P10911 925 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 KLRC2P26717 231 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 CLCN4P51793 760 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 ZNF131P52739 623 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 CBX2Q14781 532 aaPredicted RBP19.66■□□□□ 0.74
UPF3A-203ENST00000474056 SLC39A14Q15043 492 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 TPRNQ4KMQ1 711 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 RARS2Q5T160 578 aaKnown RBP19.66■□□□□ 0.74
UPF3A-203ENST00000474056 KANK3Q6NY19 840 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 PPFIBP1Q86W92 1011 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 FEZF2Q8TBJ5 459 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 PPP1R10Q96QC0 940 aaKnown RBP19.66■□□□□ 0.74
UPF3A-203ENST00000474056 TCHPQ9BT92 498 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 CCDC94Q9BW85 323 aaPredicted RBP19.66■□□□□ 0.74
UPF3A-203ENST00000474056 CHST7Q9NS84 486 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 DZANK1Q9NVP4 752 aa19.66■□□□□ 0.74
UPF3A-203ENST00000474056 MORC2Q9Y6X9 1032 aaPredicted RBP19.66■□□□□ 0.74
UPF3A-203ENST00000474056 ANK1P16157 1881 aa19.65■□□□□ 0.74
UPF3A-203ENST00000474056 DOCK6Q96HP0 2047 aa19.65■□□□□ 0.74
UPF3A-203ENST00000474056 LOC730098B7Z3J9 87 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms