RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 PRKCBP05771 671 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 PRKAR2AP13861 404 aaKnown RBP8.97□□□□□ -0.97
BRCA1-208ENST00000468300 UCHL3P15374 230 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 ACOT2P49753 483 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 LIG4P49917 911 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 CDK17Q00537 523 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 STRN3Q13033 797 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 EEF1DP3Q658K8 133 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 TMC2Q8TDI7 906 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 PPP1R13BQ96KQ4 1090 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 EDEM3Q9BZQ6 932 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 GCNT4Q9P109 453 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 HDAC6Q9UBN7 1215 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 COQ4Q9Y3A0 265 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 MYL3P08590 195 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 GCLMP48507 274 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 EXOC3L4Q17RC7 722 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 TCERG1LQ5VWI1 586 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 WNT8BQ93098 351 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 DESI2Q9BSY9 194 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 AGO2Q9UKV8 859 aaKnown RBP8.97□□□□□ -0.97
BRCA1-208ENST00000468300 ADGRG1Q9Y653 693 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 SMIM35A0A1B0GVV1 85 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 RRN3P2A6NIE6 340 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 TOM1L1O75674 476 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 POLR2FP61218 127 aaKnown RBP8.97□□□□□ -0.97
BRCA1-208ENST00000468300 PSMD6Q15008 389 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 IQCEQ6IPM2 695 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 IRF2BP2Q7Z5L9 587 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 TMEM192Q8IY95 271 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 TMEM40Q8WWA1 233 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 IQCDQ96DY2 449 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 BICD1Q96G01 975 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 MRPL4Q9BYD3 311 aaKnown RBP8.97□□□□□ -0.97
BRCA1-208ENST00000468300 AP5M1Q9H0R1 490 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 C2orf40Q9H1Z8 148 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 TRMT1Q9NXH9 659 aaKnown RBP8.97□□□□□ -0.97
BRCA1-208ENST00000468300 SAGE1Q9NXZ1 904 aa8.97□□□□□ -0.97
BRCA1-208ENST00000468300 PDCD11Q14690 1871 aaKnown RBP8.96□□□□□ -0.97
BRCA1-208ENST00000468300 RALGAPA2Q2PPJ7 1873 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 C6orf222P0C671 652 aaPredicted RBP8.96□□□□□ -0.97
BRCA1-208ENST00000468300 CST5P28325 142 aaPredicted RBP8.96□□□□□ -0.97
BRCA1-208ENST00000468300 HOXA11P31270 313 aaPredicted RBP8.96□□□□□ -0.97
BRCA1-208ENST00000468300 MAPK6Q16659 721 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 MFSD4BQ5TF39 518 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 LHX8Q68G74 356 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 GBP6Q6ZN66 633 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 RRAGAQ7L523 313 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 CDR2LQ86X02 465 aaPredicted RBP8.96□□□□□ -0.97
BRCA1-208ENST00000468300 GPIHBP1Q8IV16 184 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 ARHGEF19Q8IW93 802 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 EHBP1Q8NDI1 1231 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 NEK11Q8NG66 645 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 PXYLP1Q8TE99 480 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 INTS2Q9H0H0 1204 aaKnown RBP8.96□□□□□ -0.97
BRCA1-208ENST00000468300 PDZD7Q9H5P4 517 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 NLRC4Q9NPP4 1024 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 AIPL1Q9NZN9 384 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 CPSF3Q9UKF6 684 aaKnown RBP8.96□□□□□ -0.97
BRCA1-208ENST00000468300 PPP2R2CQ9Y2T4 447 aa8.96□□□□□ -0.97
BRCA1-208ENST00000468300 TSPAN1O60635 241 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 VNN1O95497 513 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 C4BPAP04003 597 aaKnown RBP8.96□□□□□ -0.98
BRCA1-208ENST00000468300 MYL7Q01449 175 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 MTA1Q13330 715 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 TFDP1Q14186 410 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 SLFN12LQ6IEE8 588 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 CXCL17Q6UXB2 119 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 CYP26C1Q6V0L0 522 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 TMTC1Q8IUR5 882 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 TMEM130Q8N3G9 435 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 SYN2Q92777 582 aaPredicted RBP8.96□□□□□ -0.98
BRCA1-208ENST00000468300 ELMO3Q96BJ8 720 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 ANKFY1Q9P2R3 1169 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 AKT3Q9Y243 479 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 TNFSF13BQ9Y275 285 aa8.96□□□□□ -0.98
BRCA1-208ENST00000468300 P4HA2O15460 535 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 LCA5LO95447 670 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 HMGCRP04035 888 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 PNMA6AP0CW24 399 aaPredicted RBP8.95□□□□□ -0.98
BRCA1-208ENST00000468300 ARF4P18085 180 aaPredicted RBP8.95□□□□□ -0.98
BRCA1-208ENST00000468300 FGFR4P22455 802 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 TMEM62Q0P6H9 643 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 GNASQ5JWF2 1037 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 ATF7IP2Q5U623 682 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 SV2AQ7L0J3 742 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 ACRBPQ8NEB7 543 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 CCDC127Q96BQ5 260 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 CPB2Q96IY4 423 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 PCMTD1Q96MG8 357 aaPredicted RBP8.95□□□□□ -0.98
BRCA1-208ENST00000468300 SYT11Q9BT88 431 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 MSTO1Q9BUK6 570 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 CDT1Q9H211 546 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 NHEJ1Q9H9Q4 299 aaPredicted RBP8.95□□□□□ -0.98
BRCA1-208ENST00000468300 PDE11AQ9HCR9 933 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 RCCD1A6NED2 376 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 ZNF233A6NK53 670 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 KIAA0391O15091 583 aaKnown RBP8.95□□□□□ -0.98
BRCA1-208ENST00000468300 GTF2H1P32780 548 aa8.95□□□□□ -0.98
BRCA1-208ENST00000468300 ARHGAP25P42331 645 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms