RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 LIG4P49917 911 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 CLDN10P78369 228 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 BFSP2Q13515 415 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 TCTN1Q2MV58 587 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 SEZ6Q53EL9 994 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 HSP90AA4PQ58FG1 418 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 TCP11X2Q5H9J9 407 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 ZBTB41Q5SVQ8 909 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 ATF7IP2Q5U623 682 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 ALKAL1Q6UXT8 129 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 HS2ST1Q7LGA3 356 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 FRMD5Q7Z6J6 570 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 MRPL10Q7Z7H8 261 aaKnown RBP6.5□□□□□ -1.37
USP39-213ENST00000467885 TMEM192Q8IY95 271 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 CRIPAKQ8N1N5 446 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 USP38Q8NB14 1042 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 XXYLT1Q8NBI6 393 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 CAGE1Q8TC20 777 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 PLEKHO2Q8TD55 490 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 ZNF516Q92618 1163 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 ABHD8Q96I13 439 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 CPB2Q96IY4 423 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 PRIMPOLQ96LW4 560 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 TCHPQ9BT92 498 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 MKNK1Q9BUB5 465 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 WNT8AQ9H1J5 351 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 CXCL16Q9H2A7 254 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 PDZD7Q9H5P4 517 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 TMEM39AQ9NV64 488 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 HSPBP1Q9NZL4 362 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 AGO2Q9UKV8 859 aaKnown RBP6.5□□□□□ -1.37
USP39-213ENST00000467885 NOD1Q9Y239 953 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 PHLPP2Q6ZVD8 1323 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 SCN10AQ9Y5Y9 1956 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 GOLGA6L3A6NEY3 463 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 ZNF233A6NK53 670 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 KIAA0391O15091 583 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 OGTO15294 1046 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 TLR3O15455 904 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 TEX33O43247 280 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 MGEA5O60502 916 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 EXOC3O60645 756 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 FGFR1OPO95684 399 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 GNA14O95837 355 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 LDHAP00338 332 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 TIMP1P01033 207 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 CXCL10P02778 98 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 CTSHP09668 335 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 MCF2P10911 925 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 GHRP10912 638 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 CDK11BP21127 795 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 NR2F2P24468 414 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 CYP2C18P33260 490 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 TNFSF9P41273 254 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 ACOT2P49753 483 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 CCL23P55773 120 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 WNT7BP56706 349 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 DLG4P78352 724 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 FANCCQ00597 558 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 POU5F1Q01860 360 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 NCBP1Q09161 790 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 NFX1Q12986 1120 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 KRT31Q15323 416 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 ZBTB6Q15916 424 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 SLC10A6Q3KNW5 377 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 PLEKHG4Q58EX7 1191 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 TJAP1Q5JTD0 557 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 MIIPQ5JXC2 388 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 SCARA3Q6AZY7 606 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 DPY19L2P1Q6NXN4 242 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 MPZL3Q6UWV2 235 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 FAM43BQ6ZT52 329 aaPredicted RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 LRRC8DQ7L1W4 858 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 C16orf59Q7L2K0 433 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 CATSPER4Q7RTX7 472 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 ZBTB33Q86T24 672 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 CBWD2Q8IUF1 395 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 TRIM59Q8IWR1 403 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 SMG8Q8ND04 991 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 DBF4BQ8NFT6 615 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 PARD3BQ8TEW8 1205 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 POMGNT1Q8WZA1 660 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 POP1Q99575 1024 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 TSG101Q99816 390 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 FAM213AQ9BRX8 229 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 TUBGCP2Q9BSJ2 902 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 EIF2AQ9BY44 585 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 CDT1Q9H211 546 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 HIPK3Q9H422 1215 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 GRPEL1Q9HAV7 217 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 KIAA1586Q9HCI6 787 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 RGS18Q9NS28 235 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 AGPAT5Q9NUQ2 364 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 CPSF3Q9UKF6 684 aaKnown RBP6.49□□□□□ -1.37
USP39-213ENST00000467885 ATP11BQ9Y2G3 1177 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 MROH7Q68CQ1 1323 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 CNTNAP2Q9UHC6 1331 aa6.49□□□□□ -1.37
USP39-213ENST00000467885 A0A0U1RQF3 1178 aa6.48□□□□□ -1.37
USP39-213ENST00000467885 A0A1B0GTH6 734 aa6.48□□□□□ -1.37
USP39-213ENST00000467885 TTC26A0AVF1 554 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms