RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 DDIASQ8IXT1 998 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 ST13P4Q8IZP2 240 aaPredicted RBP9.23□□□□□ -0.93
HPS4-209ENST00000466781 DCP1AQ9NPI6 582 aaPredicted RBP9.23□□□□□ -0.93
HPS4-209ENST00000466781 CEP72Q9P209 647 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 PPARGC1AQ9UBK2 798 aaKnown RBP9.23□□□□□ -0.93
HPS4-209ENST00000466781 PHLPP1O60346 1717 aa9.23□□□□□ -0.93
HPS4-209ENST00000466781 TADA2AO75478 443 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 KCNA2P16389 499 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 PEX19P40855 299 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 SULT1E1P49888 294 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 GTF2A2P52657 109 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 FCGRTP55899 365 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 CDK17Q00537 523 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 OCA2Q04671 838 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 ALS2CLQ60I27 953 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 CCNYL1Q8N7R7 359 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 CYTH2Q99418 400 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 SIK2Q9H0K1 926 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 PLEKHA5Q9HAU0 1116 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 TMEM260Q9NX78 707 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 SEC31AO94979 1220 aaKnown RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 HSPA1AP0DMV8 641 aaKnown RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 HSPA1BP0DMV9 641 aaKnown RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 VAMP7P51809 220 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 ALKBH5Q6P6C2 394 aaKnown RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 HHIPL2Q6UWX4 724 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 ZNF280CQ8ND82 737 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 HEMGNQ9BXL5 484 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 DAGLAQ9Y4D2 1042 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 MEGF6O75095 1541 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 COL5A2P05997 1499 aaPredicted RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 ENTPD3O75355 529 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 NPM3O75607 178 aaKnown RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 NDUFA10O95299 355 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 P4HBP07237 508 aaKnown RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 GCLMP48507 274 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 TMED1Q13445 227 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 TKFCQ3LXA3 575 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 PRAMEF18Q5VWM3 479 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 ARMC6Q6NXE6 501 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 ADCK2Q7Z695 626 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 RNF135Q8IUD6 432 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 TDRD7Q8NHU6 1098 aaKnown RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 ASAP3Q8TDY4 903 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 ABTB1Q969K4 478 aaPredicted RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 NUP85Q9BW27 656 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 OSBPL5Q9H0X9 879 aaPredicted RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 TMEM60Q9H2L4 133 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 SAMSN1Q9NSI8 373 aaKnown RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 SRGAP2O75044 1071 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 ZRANB2O95218 330 aaKnown RBP eCLIP9.22□□□□□ -0.93
HPS4-209ENST00000466781 STAT3P40763 770 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 AP3M2P53677 418 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 HDLBPQ00341 1268 aaKnown RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 SLC7A5Q01650 507 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 GRIN1Q05586 938 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 CEP95Q96GE4 821 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 TMEM47Q9BQJ4 181 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 PIN4Q9Y237 131 aaKnown RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 UBR1Q8IWV7 1749 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 APOL1O14791 398 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 KRT7P08729 469 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 GPD1LQ8N335 351 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 HIPK4Q8NE63 616 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 ZNF668Q96K58 619 aaPredicted RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 DHX35Q9H5Z1 703 aaKnown RBP9.22□□□□□ -0.93
HPS4-209ENST00000466781 GJB4Q9NTQ9 266 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 AIPL1Q9NZN9 384 aa9.22□□□□□ -0.93
HPS4-209ENST00000466781 ARHGEF28Q8N1W1 1705 aaKnown RBP9.21□□□□□ -0.93
HPS4-209ENST00000466781 MIF4GDA9UHW6 222 aaKnown RBP9.21□□□□□ -0.93
HPS4-209ENST00000466781 IRF1P10914 325 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 CAPZA2P47755 286 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 QARSP47897 775 aaKnown RBP9.21□□□□□ -0.93
HPS4-209ENST00000466781 CDC42EP5Q6NZY7 148 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 C11orf57Q6ZUT1 292 aaPredicted RBP9.21□□□□□ -0.93
HPS4-209ENST00000466781 B4GALNT2Q8NHY0 566 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 ZNF564Q8TBZ8 553 aaPredicted RBP9.21□□□□□ -0.93
HPS4-209ENST00000466781 TNIP3Q96KP6 325 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 C11orf70Q9BRQ4 267 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 ACTR5Q9H9F9 607 aaPredicted RBP9.21□□□□□ -0.93
HPS4-209ENST00000466781 PCSK1NQ9UHG2 260 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 E9PMD0 336 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 PSMC5P62195 406 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 FAM102AQ5T9C2 384 aaPredicted RBP9.21□□□□□ -0.93
HPS4-209ENST00000466781 SAMD7Q7Z3H4 446 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 LINC00301Q8NCQ3 95 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 OR6P1Q8NGX9 317 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 PANX2Q96RD6 677 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 SMYD3Q9H7B4 428 aa9.21□□□□□ -0.93
HPS4-209ENST00000466781 WARS2Q9UGM6 360 aaKnown RBP9.21□□□□□ -0.93
HPS4-209ENST00000466781 KRT87PA6NCN2 255 aa9.21□□□□□ -0.94
HPS4-209ENST00000466781 C5orf58C9J3I9 102 aa9.21□□□□□ -0.94
HPS4-209ENST00000466781 TADA3O75528 432 aa9.21□□□□□ -0.94
HPS4-209ENST00000466781 NR1D1P20393 614 aa9.21□□□□□ -0.94
HPS4-209ENST00000466781 SLC9A5Q14940 896 aa9.21□□□□□ -0.94
HPS4-209ENST00000466781 FAM20AQ96MK3 541 aa9.21□□□□□ -0.94
HPS4-209ENST00000466781 ZFP42Q96MM3 310 aa9.21□□□□□ -0.94
HPS4-209ENST00000466781 OLFML3Q9NRN5 406 aa9.21□□□□□ -0.94
HPS4-209ENST00000466781 RGL1Q9NZL6 768 aa9.21□□□□□ -0.94
HPS4-209ENST00000466781 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms