RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 INO80B-WBP1J3KQ70 363 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 ERLIN2O94905 339 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 SLC11A1P49279 550 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 UBXN11Q5T124 520 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 IFNLR1Q8IU57 520 aaPredicted RBP19.49■□□□□ 0.71
COL7A1-205ENST00000465238 CNNM3Q8NE01 707 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 BSNDQ8WZ55 320 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 PBXIP1Q96AQ6 731 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 FBXL18Q96ME1 805 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 NFKBIZQ9BYH8 718 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 C2orf40Q9H1Z8 148 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 CUEDC2Q9H467 287 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 C17orf75Q9HAS0 396 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 DZANK1Q9NVP4 752 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 DNAJB4Q9UDY4 337 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 KCNH3Q9ULD8 1083 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 ODF2LQ9ULJ1 636 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 NR2E1Q9Y466 385 aa19.49■□□□□ 0.71
COL7A1-205ENST00000465238 CCDC169A6NNP5 214 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 SFI1A8K8P3 1242 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 POLR2DO15514 142 aaKnown RBP19.48■□□□□ 0.71
COL7A1-205ENST00000465238 AXLP30530 894 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 PEX3P56589 373 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 CACNB1Q02641 598 aaPredicted RBP19.48■□□□□ 0.71
COL7A1-205ENST00000465238 SIGLEC14Q08ET2 396 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 NCBP1Q09161 790 aaKnown RBP19.48■□□□□ 0.71
COL7A1-205ENST00000465238 MAPK7Q13164 816 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 DMP1Q13316 513 aaPredicted RBP19.48■□□□□ 0.71
COL7A1-205ENST00000465238 PTPN21Q16825 1174 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 ZNF280BQ86YH2 543 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 DAW1Q8N136 415 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 BCL7CQ8WUZ0 217 aaPredicted RBP19.48■□□□□ 0.71
COL7A1-205ENST00000465238 AUTS2Q8WXX7 1259 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 REEP2Q9BRK0 252 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 TMEM175Q9BSA9 504 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 LRRC27Q9C0I9 530 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 UBN1Q9NPG3 1134 aa19.48■□□□□ 0.71
COL7A1-205ENST00000465238 A0A1B0GVL5 298 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 A0A1W2PQ27 194 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 A0A1W2PQ64 194 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 A0A1W2PQD8 194 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 TBCAO75347 108 aaKnown RBP19.47■□□□□ 0.71
COL7A1-205ENST00000465238 FAM13AO94988 1023 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 ALDH2P05091 517 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 MTHFRP42898 656 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 SMTNP53814 917 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 MBTD1Q05BQ5 628 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 E2F4Q16254 413 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 PPFIBP1Q86W92 1011 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 CCDC51Q96ER9 411 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 RIPOR3Q96MK2 946 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 FAM193BQ96PV7 902 aaPredicted RBP19.47■□□□□ 0.71
COL7A1-205ENST00000465238 ZHX3Q9H4I2 956 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 KMT5AQ9NQR1 393 aa19.47■□□□□ 0.71
COL7A1-205ENST00000465238 LARSQ9P2J5 1176 aaKnown RBP19.47■□□□□ 0.71
COL7A1-205ENST00000465238 B4GALT3O60512 393 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 TSPAN1O60635 241 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 DDHD2O94830 711 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 ITGA4P13612 1032 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 PLS3P13797 630 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 PFKFB1P16118 471 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 NPTX2P47972 431 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 EFNA5P52803 228 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 AMPD3Q01432 767 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 NHLH1Q02575 133 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 PTPN14Q15678 1187 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 CDCA2Q69YH5 1023 aaPredicted RBP19.46■□□□□ 0.71
COL7A1-205ENST00000465238 NOTUMQ6P988 496 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 DYMQ7RTS9 669 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 SUGP1Q8IWZ8 645 aaKnown RBP19.46■□□□□ 0.71
COL7A1-205ENST00000465238 VN1R3Q9BXE9 311 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 TNMDQ9H2S6 317 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 POMKQ9H5K3 350 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 FAN1Q9Y2M0 1017 aa19.46■□□□□ 0.71
COL7A1-205ENST00000465238 MYMKA6NI61 221 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 POMCP01189 267 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 EPCAMP16422 314 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 LIG1P18858 919 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 SP100P23497 879 aaPredicted RBP19.45■□□□□ 0.7
COL7A1-205ENST00000465238 AFF1P51825 1210 aaKnown RBP19.45■□□□□ 0.7
COL7A1-205ENST00000465238 MAPK6Q16659 721 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 RARS2Q5T160 578 aaKnown RBP19.45■□□□□ 0.7
COL7A1-205ENST00000465238 ZBTB33Q86T24 672 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 CEP57L1Q8IYX8 460 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 FBXL6Q8N531 539 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 MYCT1Q8N699 235 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 FSIP1Q8NA03 581 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 SMG8Q8ND04 991 aaKnown RBP19.45■□□□□ 0.7
COL7A1-205ENST00000465238 SLC22A17Q8WUG5 538 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 SPIRE2Q8WWL2 714 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 DDX12PQ92771 950 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 MAGEF1Q9HAY2 307 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 PARVGQ9HBI0 331 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 PRMT7Q9NVM4 692 aaPredicted RBP19.45■□□□□ 0.7
COL7A1-205ENST00000465238 CDH22Q9UJ99 828 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 IPPQ9Y573 584 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 MYO10Q9HD67 2058 aa19.45■□□□□ 0.7
COL7A1-205ENST00000465238 K7ERI5 159 aa19.44■□□□□ 0.7
COL7A1-205ENST00000465238 NRP1O14786 923 aa19.44■□□□□ 0.7
COL7A1-205ENST00000465238 INPPL1O15357 1258 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms