RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CSF1RP07333 972 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 ARSEP51690 589 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 ZNF394Q53GI3 561 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 FAM182BQ5T319 152 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 SLC44A5Q8NCS7 719 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 LRFN2Q9ULH4 789 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 DENND3A2RUS2 1198 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 TRIM49P0CI25 452 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 TRIM49CP0CI26 452 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 OR2W6PQ8NHA6 318 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 BTBD6Q96KE9 485 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 TAF6LQ9Y6J9 622 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 TYW5A2RUC4 315 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 CLDN3O15551 220 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 TNFAIP2Q03169 654 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 ZNF699Q32M78 642 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 FAM213AQ9BRX8 229 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 PIM2Q9P1W9 311 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 SLC12A6Q9UHW9 1150 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 SALL3Q9BXA9 1300 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 MYMKA6NI61 221 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 GRAMD4Q6IC98 578 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 BRINP3Q76B58 766 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 LONP2Q86WA8 852 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 GPD1LQ8N335 351 aa20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 SKA2Q8WVK7 121 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-204ENST00000463837 PI4K2BG5E9Z4 385 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 AP5Z1O43299 807 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 FMO5P49326 533 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 HPS3Q969F9 1004 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 SLC10A4Q96EP9 437 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 PSMC3IPQ9P2W1 217 aaPredicted RBP20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 SLC9A2Q9UBY0 812 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 ZNF335Q9H4Z2 1342 aaPredicted RBP20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 STAT3P40763 770 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 SLC30A9Q6PML9 568 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 MKNK1Q9BUB5 465 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 CD209Q9NNX6 404 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 SUN2Q9UH99 717 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 TRAF3IP3Q9Y228 551 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 ATF5Q9Y2D1 282 aaPredicted RBP20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 SYNE4Q8N205 404 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 TRPV6Q9H1D0 765 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 MYO3BQ8WXR4 1341 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 ASNSP08243 561 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 SCP2P22307 547 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 HSD17B3P37058 310 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 PAPOLAP51003 745 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 SEC24CP53992 1094 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 MAPRE2Q15555 327 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 FAM84BQ96KN1 310 aaPredicted RBP20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 LXNQ9BS40 222 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 AXIN2Q9Y2T1 843 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 CNTNAP5Q8WYK1 1306 aa20.12■□□□□ 0.81
CCDC88B-204ENST00000463837 ZFXP17010 805 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 ZNF18P17022 549 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 FXR2P51116 673 aaKnown RBP eCLIP20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 PPP6R3Q5H9R7 873 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 NSUN4Q96CB9 384 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 INPP5FQ9Y2H2 1132 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 GH2P01242 217 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 ADRA2BP18089 450 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 PSMC5P62195 406 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 RANBP1P43487 201 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 TMTC4Q5T4D3 741 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 DAB2IPQ5VWQ8 1189 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 DAGLBQ8NCG7 672 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 RBM15Q96T37 977 aaKnown RBP eCLIP20.11■□□□□ 0.814e-6■■■□□ 14.7
CCDC88B-204ENST00000463837 VPS11Q9H270 941 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 RAB21Q9UL25 225 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 NVLO15381 856 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 CYB5D1Q6P9G0 228 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 MYCBPAPQ8TBZ2 947 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 SLC26A7Q8TE54 656 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 SERPINB12Q96P63 405 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 MTO1Q9Y2Z2 717 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 COL15A1P39059 1388 aa20.11■□□□□ 0.81
CCDC88B-204ENST00000463837 MARK3P27448 753 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 TSSK1BQ9BXA7 367 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 CARD9Q9H257 536 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 CYP4F11Q9HBI6 524 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 DONSONQ9NYP3 566 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 P4HA2O15460 535 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 CENPCQ03188 943 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 MORF4L2Q15014 288 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 LONRF1Q17RB8 773 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 RYBPQ8N488 228 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 CAVIN3Q969G5 261 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 OVOS2A0A0G2JMS6 1433 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 ZC3H13Q5T200 1668 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 hCG_2014768A0A024R1R8 64 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 LRRIQ3A6PVS8 624 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 EIF3DO15371 548 aaKnown RBP eCLIP20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 DNAJC9Q8WXX5 260 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 SRP68Q9UHB9 627 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 NARFQ9UHQ1 456 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 ABCA9Q8IUA7 1624 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 TMEM120BA0PK00 339 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 VCPKMTQ9H867 229 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms