RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 POTEBQ6S5H4 581 aa6.6□□□□□ -1.35
VPS13D-202ENST00000460333 TRAPPC11Q7Z392 1133 aa6.6□□□□□ -1.35
VPS13D-202ENST00000460333 MAGEC3Q8TD91 643 aa6.6□□□□□ -1.35
VPS13D-202ENST00000460333 NSUN6Q8TEA1 469 aaKnown RBP6.6□□□□□ -1.35
VPS13D-202ENST00000460333 UIMC1Q96RL1 719 aa6.6□□□□□ -1.35
VPS13D-202ENST00000460333 EIF2AK1Q9BQI3 630 aaKnown RBP6.6□□□□□ -1.35
VPS13D-202ENST00000460333 RNF146Q9NTX7 359 aa6.6□□□□□ -1.35
VPS13D-202ENST00000460333 SENP1Q9P0U3 644 aa6.6□□□□□ -1.35
VPS13D-202ENST00000460333 HDAC6Q9UBN7 1215 aa6.6□□□□□ -1.35
VPS13D-202ENST00000460333 FBXL5Q9UKA1 691 aa6.6□□□□□ -1.35
VPS13D-202ENST00000460333 INTUQ9ULD6 942 aa6.6□□□□□ -1.35
VPS13D-202ENST00000460333 C15orf41Q9Y2V0 281 aa6.6□□□□□ -1.35
VPS13D-202ENST00000460333 A0A087X0B3 334 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 CIITAP33076 1130 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 OCA2Q04671 838 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 SREBF2Q12772 1141 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 MTMR1Q13613 665 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 RHOT2Q8IXI1 618 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ICA1LQ8NDH6 482 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ZNF483Q8TF39 744 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 PIK3R5Q8WYR1 880 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 RMDN3Q96TC7 470 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 FAM192AQ9GZU8 254 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ANKZF1Q9H8Y5 726 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 PARVGQ9HBI0 331 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 XAB2Q9HCS7 855 aaKnown RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 MRPL40Q9NQ50 206 aaKnown RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 TBC1D23Q9NUY8 699 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 GGA3Q9NZ52 723 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 COL4A1P02462 1669 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 E9PMD0 336 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 AP5Z1O43299 807 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 P4HBP07237 508 aaKnown RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 CHRNA3P32297 505 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 BACE1P56817 501 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 UBXN2AP68543 259 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 SFSWAPQ12872 951 aaKnown RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 GRAMD1BQ3KR37 738 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 NFRKBQ6P4R8 1299 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 SH2D3CQ8N5H7 860 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 BHMT2Q9H2M3 363 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 TRAF3IP3Q9Y228 551 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 MYMKA6NI61 221 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 MAFGO15525 162 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 SASH3O75995 380 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 STK10O94804 968 aaKnown RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 MYCP01106 439 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 KRT5P13647 590 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ZNF18P17022 549 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ABCB4P21439 1286 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 EEF1DP29692 281 aaKnown RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 SLCO1A2P46721 670 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ADRM1Q16186 407 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 TEDDM1Q5T9Z0 273 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 SNRNP48Q6IEG0 339 aaKnown RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 EP400NLQ6ZTU2 488 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 TRMT1LQ7Z2T5 733 aaKnown RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 CTAGE3PQ8IX95 158 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 UPF1Q92900 1129 aaKnown RBP eCLIP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 NAF1Q96HR8 494 aaKnown RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 MXRA8Q9BRK3 442 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 TIPINQ9BVW5 301 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ROPN1BQ9BZX4 212 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 AP5M1Q9H0R1 490 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ACAD9Q9H845 621 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ROPN1Q9HAT0 212 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ADARB2Q9NS39 739 aaKnown RBP6.59□□□□□ -1.35
VPS13D-202ENST00000460333 DLGAP2Q9P1A6 1054 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 MCM8Q9UJA3 840 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ZNF148Q9UQR1 794 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 ZNF711Q9Y462 761 aa6.59□□□□□ -1.35
VPS13D-202ENST00000460333 EXOC1LA0A1B0GW35 172 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 MCF2LO15068 1137 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 AFPP02771 609 aaKnown RBP6.59□□□□□ -1.36
VPS13D-202ENST00000460333 INHBAP08476 426 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 PECAM1P16284 738 aaPredicted RBP6.59□□□□□ -1.36
VPS13D-202ENST00000460333 SERPINB4P48594 390 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 OAZ1P54368 228 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 MED21Q13503 144 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 MTF1Q14872 753 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 PSMD6Q15008 389 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 IL17AQ16552 155 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 TMEM119Q4V9L6 283 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 RAD9BQ6WBX8 426 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 EPM2AIP1Q7L775 607 aaPredicted RBP6.59□□□□□ -1.36
VPS13D-202ENST00000460333 NIPA1Q7RTP0 329 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 NOA1Q8NC60 698 aaKnown RBP6.59□□□□□ -1.36
VPS13D-202ENST00000460333 RIN2Q8WYP3 895 aaPredicted RBP6.59□□□□□ -1.36
VPS13D-202ENST00000460333 TEX13BQ9BXU2 312 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 ISCUQ9H1K1 167 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 TMEM206Q9H813 350 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 PPCSQ9HAB8 311 aa6.59□□□□□ -1.36
VPS13D-202ENST00000460333 WDR64B1ANS9 1081 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 POC1B-GALNT4F8VUJ3 575 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 MEIS1O00470 390 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 ABLIM1O14639 778 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TEX33O43247 280 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 CCDC22O60826 627 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TTC4O95801 387 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 MCF2P10911 925 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 155.8 ms