RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 CXCL14O95715 111 aa20.49■□□□□ 0.87
USP39-209ENST00000458268 MAPTP10636 758 aaKnown RBP20.49■□□□□ 0.87
USP39-209ENST00000458268 IDEP14735 1019 aa20.49■□□□□ 0.87
USP39-209ENST00000458268 NMT1P30419 496 aaKnown RBP20.49■□□□□ 0.87
USP39-209ENST00000458268 YARSP54577 528 aaKnown RBP20.49■□□□□ 0.87
USP39-209ENST00000458268 SEZ6Q53EL9 994 aa20.49■□□□□ 0.87
USP39-209ENST00000458268 PTCRAQ6ISU1 281 aaPredicted RBP20.49■□□□□ 0.87
USP39-209ENST00000458268 FAM178BQ8IXR5 827 aa20.49■□□□□ 0.87
USP39-209ENST00000458268 COLGALT2Q8IYK4 626 aa20.49■□□□□ 0.87
USP39-209ENST00000458268 HASPINQ8TF76 798 aa20.49■□□□□ 0.87
USP39-209ENST00000458268 NGRNQ9NPE2 291 aaKnown RBP20.49■□□□□ 0.87
USP39-209ENST00000458268 TBC1D7Q9P0N9 293 aa20.49■□□□□ 0.87
USP39-209ENST00000458268 KCNG1Q9UIX4 513 aa20.49■□□□□ 0.87
USP39-209ENST00000458268 BARX2Q9UMQ3 279 aaPredicted RBP20.49■□□□□ 0.87
USP39-209ENST00000458268 CITO14578 2027 aa20.49■□□□□ 0.87
USP39-209ENST00000458268 H0YCG3 227 aa20.48■□□□□ 0.87
USP39-209ENST00000458268 TBX10O75333 385 aa20.48■□□□□ 0.87
USP39-209ENST00000458268 LIG4P49917 911 aa20.48■□□□□ 0.87
USP39-209ENST00000458268 NCKAP1LP55160 1127 aa20.48■□□□□ 0.87
USP39-209ENST00000458268 PDE12Q6L8Q7 609 aaKnown RBP20.48■□□□□ 0.87
USP39-209ENST00000458268 MPZL3Q6UWV2 235 aa20.48■□□□□ 0.87
USP39-209ENST00000458268 SFR1Q86XK3 245 aa20.48■□□□□ 0.87
USP39-209ENST00000458268 KCNG4Q8TDN1 519 aa20.48■□□□□ 0.87
USP39-209ENST00000458268 DDX12PQ92771 950 aa20.48■□□□□ 0.87
USP39-209ENST00000458268 DHX58Q96C10 678 aa20.48■□□□□ 0.87
USP39-209ENST00000458268 UHRF1Q96T88 793 aaPredicted RBP20.48■□□□□ 0.87
USP39-209ENST00000458268 APOL5Q9BWW9 433 aa20.48■□□□□ 0.87
USP39-209ENST00000458268 CFAP45Q9UL16 551 aa20.48■□□□□ 0.87
USP39-209ENST00000458268 CARNS1A5YM72 827 aa20.47■□□□□ 0.87
USP39-209ENST00000458268 MYMKA6NI61 221 aa20.47■□□□□ 0.87
USP39-209ENST00000458268 HNRNPDLO14979 420 aaKnown RBP20.47■□□□□ 0.87
USP39-209ENST00000458268 NCK2O43639 380 aa20.47■□□□□ 0.87
USP39-209ENST00000458268 THP07101 528 aa20.47■□□□□ 0.87
USP39-209ENST00000458268 IL9P15248 144 aa20.47■□□□□ 0.87
USP39-209ENST00000458268 LEXMQ3ZCV2 418 aa20.47■□□□□ 0.87
USP39-209ENST00000458268 DDX53Q86TM3 631 aaKnown RBP20.47■□□□□ 0.87
USP39-209ENST00000458268 EFHBQ8N7U6 833 aa20.47■□□□□ 0.87
USP39-209ENST00000458268 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.47■□□□□ 0.87
USP39-209ENST00000458268 COLEC11Q9BWP8 271 aa20.47■□□□□ 0.87
USP39-209ENST00000458268 VN1R3Q9BXE9 311 aa20.47■□□□□ 0.87
USP39-209ENST00000458268 ZBP1Q9H171 429 aa20.47■□□□□ 0.87
USP39-209ENST00000458268 MARCH5Q9NX47 278 aa20.47■□□□□ 0.87
USP39-209ENST00000458268 SPDYE4A6NLX3 237 aa20.46■□□□□ 0.87
USP39-209ENST00000458268 PTGESO14684 152 aa20.46■□□□□ 0.87
USP39-209ENST00000458268 BMP1P13497 986 aa20.46■□□□□ 0.87
USP39-209ENST00000458268 LTBRP36941 435 aa20.46■□□□□ 0.87
USP39-209ENST00000458268 DSC1Q08554 894 aa20.46■□□□□ 0.87
USP39-209ENST00000458268 ADAM15Q13444 863 aa20.46■□□□□ 0.87
USP39-209ENST00000458268 NOLC1Q14978 699 aaKnown RBP eCLIP20.46■□□□□ 0.87
USP39-209ENST00000458268 DUSP6Q16828 381 aa20.46■□□□□ 0.87
USP39-209ENST00000458268 ZC2HC1CQ53FD0 456 aaPredicted RBP20.46■□□□□ 0.87
USP39-209ENST00000458268 SHC4Q6S5L8 630 aa20.46■□□□□ 0.87
USP39-209ENST00000458268 GSTCDQ8NEC7 633 aa20.46■□□□□ 0.87
USP39-209ENST00000458268 NTPCRQ9BSD7 190 aaKnown RBP20.46■□□□□ 0.87
USP39-209ENST00000458268 PCDHA7Q9UN72 937 aa20.46■□□□□ 0.87
USP39-209ENST00000458268 TCHHQ07283 1943 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 C2orf71A6NGG8 1288 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 INPPL1O15357 1258 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 TADA2AO75478 443 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 BRD1O95696 1058 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 GLP2RO95838 553 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 URODP06132 367 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 MCF2P10911 925 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 GRM5P41594 1212 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 TUSC3Q13454 348 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 KIAA1841Q6NSI8 718 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 B3GALT6Q96L58 329 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 ACAP3Q96P50 834 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 PAAF1Q9BRP4 392 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 MRPL44Q9H9J2 332 aaKnown RBP20.45■□□□□ 0.86
USP39-209ENST00000458268 TOPORSQ9NS56 1045 aaPredicted RBP20.45■□□□□ 0.86
USP39-209ENST00000458268 FAM13BQ9NYF5 915 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 CD207Q9UJ71 328 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 TBX20Q9UMR3 447 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 ZDHHC9Q9Y397 364 aa20.45■□□□□ 0.86
USP39-209ENST00000458268 MORC2Q9Y6X9 1032 aaPredicted RBP20.45■□□□□ 0.86
USP39-209ENST00000458268 CLDN3O15551 220 aa20.44■□□□□ 0.86
USP39-209ENST00000458268 TOM1L1O75674 476 aa20.44■□□□□ 0.86
USP39-209ENST00000458268 SRGAP2BP0DMP2 458 aa20.44■□□□□ 0.86
USP39-209ENST00000458268 ZNF131P52739 623 aa20.44■□□□□ 0.86
USP39-209ENST00000458268 HSP90AA2PQ14568 343 aaPredicted RBP20.44■□□□□ 0.86
USP39-209ENST00000458268 TAS1R1Q7RTX1 841 aa20.44■□□□□ 0.86
USP39-209ENST00000458268 MRPL43Q8N983 215 aaKnown RBP20.44■□□□□ 0.86
USP39-209ENST00000458268 VN1R2Q8NFZ6 395 aa20.44■□□□□ 0.86
USP39-209ENST00000458268 SPATA32Q96LK8 384 aa20.44■□□□□ 0.86
USP39-209ENST00000458268 CDCA3Q99618 268 aaPredicted RBP20.44■□□□□ 0.86
USP39-209ENST00000458268 GOLGA2P5Q9HBQ8 144 aa20.44■□□□□ 0.86
USP39-209ENST00000458268 PTPRHQ9HD43 1115 aa20.44■□□□□ 0.86
USP39-209ENST00000458268 GCNT3O95395 438 aa20.43■□□□□ 0.86
USP39-209ENST00000458268 MYBP10242 640 aa20.43■□□□□ 0.86
USP39-209ENST00000458268 CTSAP10619 480 aa20.43■□□□□ 0.86
USP39-209ENST00000458268 KRT85P78386 507 aa20.43■□□□□ 0.86
USP39-209ENST00000458268 CTC1Q2NKJ3 1217 aa20.43■□□□□ 0.86
USP39-209ENST00000458268 HERC4Q5GLZ8 1057 aaPredicted RBP20.43■□□□□ 0.86
USP39-209ENST00000458268 ATL3Q6DD88 541 aa20.43■□□□□ 0.86
USP39-209ENST00000458268 FUT10Q6P4F1 479 aa20.43■□□□□ 0.86
USP39-209ENST00000458268 ZPBP2Q6X784 338 aa20.43■□□□□ 0.86
USP39-209ENST00000458268 GLYCTKQ8IVS8 523 aa20.43■□□□□ 0.86
USP39-209ENST00000458268 FAM212AQ96EL1 285 aa20.43■□□□□ 0.86
USP39-209ENST00000458268 MRPL17Q9NRX2 175 aaKnown RBP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms