RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 LARGE1O95461 756 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 NPTXRO95502 500 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 SSBP05455 408 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS41-208ENST00000448833 THP07101 528 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 CENPBP07199 599 aaPredicted RBP7.81□□□□□ -1.16
VPS41-208ENST00000448833 AVPR2P30518 371 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 MRE11P49959 708 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 SCNN1GP51170 649 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 CLCN5P51795 746 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 TUSC3Q13454 348 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 TDGQ13569 410 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 AMHR2Q16671 573 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 DCAF4L1Q3SXM0 396 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 TTC38Q5R3I4 469 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 CDCA2Q69YH5 1023 aaPredicted RBP7.81□□□□□ -1.16
VPS41-208ENST00000448833 PADI6Q6TGC4 694 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 RTL10Q7L3V2 364 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 ALYREFQ86V81 257 aaKnown RBP7.81□□□□□ -1.16
VPS41-208ENST00000448833 RNF168Q8IYW5 571 aaPredicted RBP7.81□□□□□ -1.16
VPS41-208ENST00000448833 C12orf76Q8N812 135 aaPredicted RBP7.81□□□□□ -1.16
VPS41-208ENST00000448833 ASAP3Q8TDY4 903 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 CPB2Q96IY4 423 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 ZFP42Q96MM3 310 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 TIPINQ9BVW5 301 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 APOL6Q9BWW8 343 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 C17orf75Q9HAS0 396 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 PIDD1Q9HB75 910 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 CHST7Q9NS84 486 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 ZDHHC7Q9NXF8 308 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 DNM3Q9UQ16 869 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 PRG3Q9Y2Y8 225 aaPredicted RBP7.81□□□□□ -1.16
VPS41-208ENST00000448833 RBM19Q9Y4C8 960 aaKnown RBP7.81□□□□□ -1.16
VPS41-208ENST00000448833 HES2Q9Y543 173 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 PIEZO1Q92508 2521 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 K7ERI5 159 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 TEX28O15482 410 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 ST18O60284 1047 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 MED24O75448 989 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 PAPLNO95428 1278 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 EFEMP2O95967 443 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 SCP2P22307 547 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 AKAP5P24588 427 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 U2AF2P26368 475 aaKnown RBP eCLIP7.8□□□□□ -1.162e-8■■■■□ 24.8
VPS41-208ENST00000448833 CCT6AP40227 531 aaKnown RBP7.8□□□□□ -1.16
VPS41-208ENST00000448833 PRPHP41219 470 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 AFF1P51825 1210 aaKnown RBP7.8□□□□□ -1.16
VPS41-208ENST00000448833 GUCY1B3Q02153 619 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 HSP90AA2PQ14568 343 aaPredicted RBP7.8□□□□□ -1.16
VPS41-208ENST00000448833 ZNF174Q15697 407 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 KRT79Q5XKE5 535 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 FUT10Q6P4F1 479 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 MAEAQ7L5Y9 396 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 CCDC83Q8IWF9 413 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 BCL7CQ8WUZ0 217 aaPredicted RBP7.8□□□□□ -1.16
VPS41-208ENST00000448833 DRC1Q96MC2 740 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 UROC1Q96N76 676 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 VN1R3Q9BXE9 311 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 TMEM60Q9H2L4 133 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 NXF3Q9H4D5 531 aaKnown RBP7.8□□□□□ -1.16
VPS41-208ENST00000448833 UPF2Q9HAU5 1272 aaKnown RBP7.8□□□□□ -1.16
VPS41-208ENST00000448833 WDR6Q9NNW5 1121 aaKnown RBP7.8□□□□□ -1.16
VPS41-208ENST00000448833 MAN1C1Q9NR34 630 aa7.8□□□□□ -1.16
VPS41-208ENST00000448833 TOPORSQ9NS56 1045 aaPredicted RBP7.8□□□□□ -1.16
VPS41-208ENST00000448833 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.8□□□□□ -1.16
VPS41-208ENST00000448833 B4GALT5O43286 388 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 BRD1O95696 1058 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 PRKCBP05771 671 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 HNRNPA1P09651 372 aaKnown RBP eCLIP7.79□□□□□ -1.16
VPS41-208ENST00000448833 SP100P23497 879 aaPredicted RBP7.79□□□□□ -1.16
VPS41-208ENST00000448833 MCM2P49736 904 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 FOSBP53539 338 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 YARSP54577 528 aaKnown RBP7.79□□□□□ -1.16
VPS41-208ENST00000448833 PTGDRQ13258 359 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 UVSSAQ2YD98 709 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 RILPL1Q5EBL4 403 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 LIN9Q5TKA1 542 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 ASTLQ6HA08 431 aaPredicted RBP7.79□□□□□ -1.16
VPS41-208ENST00000448833 DCLRE1AQ6PJP8 1040 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 DTHD1Q6ZMT9 781 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 GSTCDQ8NEC7 633 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 RIN2Q8WYP3 895 aaPredicted RBP7.79□□□□□ -1.16
VPS41-208ENST00000448833 SMG7Q92540 1137 aaKnown RBP7.79□□□□□ -1.16
VPS41-208ENST00000448833 DDX27Q96GQ7 796 aaKnown RBP7.79□□□□□ -1.16
VPS41-208ENST00000448833 RTP3Q9BQQ7 232 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 TTPALQ9BTX7 342 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 PRKD2Q9BZL6 878 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 NT5C3AQ9H0P0 336 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 BHMT2Q9H2M3 363 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 TMEM134Q9H6X4 195 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 KCNK12Q9HB15 430 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 SLC38A7Q9NVC3 462 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 MARCH5Q9NX47 278 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 MIOSQ9NXC5 875 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 KLK14Q9P0G3 267 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 EPS15L1Q9UBC2 864 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 WNT16Q9UBV4 365 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 FBXL21Q9UKT6 434 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 KIAA1024Q9UPX6 916 aa7.79□□□□□ -1.16
VPS41-208ENST00000448833 ZDBF2Q9HCK1 2354 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 H0YCG3 227 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms