RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 SRRM3A6NNA2 597 aaPredicted RBP17.2■□□□□ 0.34
SHQ1-202ENST00000444040 EFCAB13Q8IY85 973 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 JDP2Q8WYK2 163 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 TATDN2Q93075 761 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 BTBD6Q96KE9 485 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 ATP8A1Q9Y2Q0 1164 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 GGPS1O95749 300 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 PDE6CP51160 858 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 NBPF12Q5TAG4 269 aaPredicted RBP17.2■□□□□ 0.34
SHQ1-202ENST00000444040 TAS1R3Q7RTX0 852 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 POMGNT1Q8WZA1 660 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 DHX38Q92620 1227 aaKnown RBP17.2■□□□□ 0.34
SHQ1-202ENST00000444040 ATP6V0A1Q93050 837 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 ELMO3Q96BJ8 720 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 GRHL1Q9NZI5 618 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 SNX24Q9Y343 169 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 PARP14Q460N5 1801 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 CYP1B1Q16678 543 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 ZNF653Q96CK0 615 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 FAM107BQ9H098 131 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 UVRAGQ9P2Y5 699 aa17.2■□□□□ 0.34
SHQ1-202ENST00000444040 SEC24CP53992 1094 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 RTP1P59025 263 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 ENPEPQ07075 957 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 SEL1L2Q5TEA6 688 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 SWSAP1Q6NVH7 229 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 GPD1LQ8N335 351 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 FBXO25Q8TCJ0 367 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 MAGOHBQ96A72 148 aaKnown RBP17.19■□□□□ 0.34
SHQ1-202ENST00000444040 TAOK3Q9H2K8 898 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 PIM2Q9P1W9 311 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 RASAL2Q9UJF2 1139 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 ZNF214Q9UL59 606 aaPredicted RBP17.19■□□□□ 0.34
SHQ1-202ENST00000444040 ADAMTS5Q9UNA0 930 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 TCRBV7S2A1N4TA0A589 114 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 TULP1O00294 542 aaPredicted RBP17.19■□□□□ 0.34
SHQ1-202ENST00000444040 DGAT1O75907 488 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 GARTP22102 1010 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 SIX1Q15475 284 aaPredicted RBP17.19■□□□□ 0.34
SHQ1-202ENST00000444040 BRDTQ58F21 947 aaPredicted RBP17.19■□□□□ 0.34
SHQ1-202ENST00000444040 SNRNP48Q6IEG0 339 aaKnown RBP17.19■□□□□ 0.34
SHQ1-202ENST00000444040 ACAD10Q6JQN1 1059 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 SAMD7Q7Z3H4 446 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 PAGR1Q9BTK6 254 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 HACL1Q9UJ83 578 aa17.19■□□□□ 0.34
SHQ1-202ENST00000444040 DLATP10515 647 aaKnown RBP17.18■□□□□ 0.34
SHQ1-202ENST00000444040 RPS12P25398 132 aaKnown RBP17.18■□□□□ 0.34
SHQ1-202ENST00000444040 PLTPP55058 493 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 EIF3BP55884 814 aaKnown RBP17.18■□□□□ 0.34
SHQ1-202ENST00000444040 GCNT1Q02742 428 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 CCDC137Q6PK04 289 aaKnown RBP17.18■□□□□ 0.34
SHQ1-202ENST00000444040 C15orf39Q6ZRI6 1047 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 USP37Q86T82 979 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 SLC13A5Q86YT5 568 aaPredicted RBP17.18■□□□□ 0.34
SHQ1-202ENST00000444040 CCDC60Q8IWA6 550 aaPredicted RBP17.18■□□□□ 0.34
SHQ1-202ENST00000444040 NSUN6Q8TEA1 469 aaKnown RBP17.18■□□□□ 0.34
SHQ1-202ENST00000444040 ARHGAP28Q9P2N2 729 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 CNOT8Q9UFF9 292 aaKnown RBP17.18■□□□□ 0.34
SHQ1-202ENST00000444040 NOVA2Q9UNW9 492 aaKnown RBP17.18■□□□□ 0.34
SHQ1-202ENST00000444040 DCDC2CA8MYV0 355 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 PODXLO00592 558 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 HNRNPDLO14979 420 aaKnown RBP17.18■□□□□ 0.34
SHQ1-202ENST00000444040 PSAPP07602 524 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 NUDT17P0C025 328 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 NLRP14Q86W24 1093 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 SCYL3Q8IZE3 742 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 MCPH1Q8NEM0 835 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 MYCBPAPQ8TBZ2 947 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 CCT8L2Q96SF2 557 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 BCCIPQ9P287 314 aaKnown RBP eCLIP17.18■□□□□ 0.34
SHQ1-202ENST00000444040 ZNF112Q9UJU3 913 aa17.18■□□□□ 0.34
SHQ1-202ENST00000444040 A0A087WUV0 522 aaPredicted RBP17.17■□□□□ 0.34
SHQ1-202ENST00000444040 SPOPO43791 374 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 DKC1O60832 514 aaKnown RBP eCLIP17.17■□□□□ 0.34
SHQ1-202ENST00000444040 RPL21P46778 160 aaKnown RBP17.17■□□□□ 0.34
SHQ1-202ENST00000444040 OAZ1P54368 228 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 PPP2R2AP63151 447 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 CLEC16AQ2KHT3 1053 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 KRT71Q3SY84 523 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 B4GALNT4Q76KP1 1039 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 ZNF280CQ8ND82 737 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 ZNF473Q8WTR7 871 aaKnown RBP17.17■□□□□ 0.34
SHQ1-202ENST00000444040 ZNF516Q92618 1163 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 PI4K2AQ9BTU6 479 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 PABPC3Q9H361 631 aaKnown RBP17.17■□□□□ 0.34
SHQ1-202ENST00000444040 CYP26B1Q9NR63 512 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 NFASCO94856 1347 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 RLFQ13129 1914 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 ERLIN2O94905 339 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 PTPRAP18433 802 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 DSG3P32926 999 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 ABHD15Q6UXT9 468 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 ZKSCAN4Q969J2 545 aaPredicted RBP17.17■□□□□ 0.34
SHQ1-202ENST00000444040 TLCD1Q96CP7 247 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 FAM84AQ96KN4 292 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 FAM213AQ9BRX8 229 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 JPH1Q9HDC5 661 aaPredicted RBP17.17■□□□□ 0.34
SHQ1-202ENST00000444040 TMEM51Q9NW97 253 aa17.17■□□□□ 0.34
SHQ1-202ENST00000444040 NFKBIEO00221 500 aa17.16■□□□□ 0.34
SHQ1-202ENST00000444040 ZC3H11AO75152 810 aaKnown RBP eCLIP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms