RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 FRMPD3Q5JV73 1810 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 TCP11X1B4DZS4 312 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 USP17L10C9JJH3 530 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 RASGRF2O14827 1237 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 CETN3O15182 167 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 TDP2O95551 362 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 CYP2C8P10632 490 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 EEF2P13639 858 aaKnown RBP9.19□□□□□ -0.94
HPS4-206ENST00000439453 PON1P27169 355 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 GALCP54803 685 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 AUHQ13825 339 aaKnown RBP9.19□□□□□ -0.94
HPS4-206ENST00000439453 DHX34Q14147 1143 aaKnown RBP9.19□□□□□ -0.94
HPS4-206ENST00000439453 CCDC38Q502W7 563 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 TNFAIP8L3Q5GJ75 292 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 C17orf99Q6UX52 265 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 ASRGL1Q7L266 308 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 SCFD1Q8WVM8 642 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 NAP1L3Q99457 506 aaPredicted RBP9.19□□□□□ -0.94
HPS4-206ENST00000439453 MKNK2Q9HBH9 465 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 ARHGEF10LQ9HCE6 1279 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 RASAL2Q9UJF2 1139 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 PPP1R9AQ9ULJ8 1098 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 PCDHA2Q9Y5H9 948 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 SNUPNO95149 360 aaKnown RBP9.19□□□□□ -0.94
HPS4-206ENST00000439453 TSPY3P0CV98 308 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 TSPY8P0CW00 308 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 BCRP11274 1271 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 LRRC14Q15048 493 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 EXOC3L4Q17RC7 722 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 CCDC65Q8IXS2 484 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 KCNV2Q8TDN2 545 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 OSBPL1AQ9BXW6 950 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 OSGEPQ9NPF4 335 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 GRHL1Q9NZI5 618 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 STX8Q9UNK0 236 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 TRIM33Q9UPN9 1127 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 ARL2BPQ9Y2Y0 163 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 TNRC18O15417 2968 aaPredicted RBP9.19□□□□□ -0.94
HPS4-206ENST00000439453 PEX10O60683 326 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 AFPP02771 609 aaKnown RBP9.19□□□□□ -0.94
HPS4-206ENST00000439453 VCAM1P19320 739 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 CTCFP49711 727 aaPredicted RBP9.19□□□□□ -0.94
HPS4-206ENST00000439453 MAPK7Q13164 816 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 RBBP5Q15291 538 aaKnown RBP9.19□□□□□ -0.94
HPS4-206ENST00000439453 THEMIS2Q5TEJ8 643 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 MGARPQ8TDB4 240 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 NAF1Q96HR8 494 aaKnown RBP9.19□□□□□ -0.94
HPS4-206ENST00000439453 ANKRD27Q96NW4 1050 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 AS3MTQ9HBK9 375 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 VAT1LQ9HCJ6 419 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 ETAA1Q9NY74 926 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 MTMR4Q9NYA4 1195 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 LRRC37A2A6NM11 1700 aa9.19□□□□□ -0.94
HPS4-206ENST00000439453 O00370 1275 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 CNMDO75829 334 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 WFS1O76024 890 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 GJB6O95452 261 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 FGFR4P22455 802 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 NR2F2P24468 414 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 RWDD2BP57060 319 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 ZNF211Q13398 564 aaPredicted RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 PLS1Q14651 629 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 GADL1Q6ZQY3 521 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 SPATA21Q7Z572 469 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 EXOC3L1Q86VI1 746 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 TEX9Q8N6V9 391 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 SLC35G2Q8TBE7 412 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 ZNF296Q8WUU4 475 aaPredicted RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 MKL1Q969V6 931 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 CARD9Q9H257 536 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 RXFP1Q9HBX9 757 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 MTRF1LQ9UGC7 380 aaKnown RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 SEC63Q9UGP8 760 aaKnown RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 AJAP1Q9UKB5 411 aaPredicted RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 C19orf81C9J6K1 198 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 RIPK2O43353 540 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 EDIL3O43854 480 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 KRT13P13646 458 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 PTGIRP43119 386 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 RPL21P46778 160 aaKnown RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 CACNB1Q02641 598 aaPredicted RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 EDRF1Q3B7T1 1238 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 HERC4Q5GLZ8 1057 aaPredicted RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 COL13A1Q5TAT6 717 aaPredicted RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 NUGGCQ68CJ6 796 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 FITM2Q8N6M3 262 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 ARMCX3Q9UH62 379 aaPredicted RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 NCANO14594 1321 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 NPHP3-ACAD11A0A0J9YXS1 232 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 EIF4E1BA6NMX2 242 aaKnown RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 GPR25O00155 361 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 MPHOSPH10O00566 681 aaKnown RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 AHCYL1O43865 530 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 AP1G2O75843 785 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 ALDH1A1P00352 501 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 FESP07332 822 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 PECAM1P16284 738 aaPredicted RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 ATP4AP20648 1035 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 JAM2P57087 298 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 MFSD5Q6N075 450 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms