RNA–Protein interactions for RNA: ENST00000435891.5

CLSTN1-203, Transcript of calsyntenin 1, humanhuman

TSL 2

Gene CLSTN1, Length 3,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-203ENST00000435891 MTMR3Q13615 1198 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 TUBB8Q3ZCM7 444 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 C2CD6Q53TS8 623 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 LLGL2Q6P1M3 1020 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 PHLDB2Q86SQ0 1253 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 PARD3BQ8TEW8 1205 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 SHC3Q92529 594 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 CCDC114Q96M63 670 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 NUP85Q9BW27 656 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 RAB17Q9H0T7 212 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 TBX20Q9UMR3 447 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 DIS3Q9Y2L1 958 aaKnown RBP11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 PTPN22Q9Y2R2 807 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 PCDHA3Q9Y5H8 950 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 GOLGA6L10A0A0M3HER8 536 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 SMIM23A6NLE4 172 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 PPP2R2AP63151 447 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 TNIP1Q15025 636 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 RUFY4Q6ZNE9 571 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 RMDN3Q96TC7 470 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 SEMA4AQ9H3S1 761 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 PNMA2Q9UL42 364 aa11.18□□□□□ -0.62
CLSTN1-203ENST00000435891 LOXHD1Q8IVV2 1947 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 DENND3A2RUS2 1198 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 ENO4A6NNW6 628 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 P4HA2O15460 535 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 PHF2O75151 1096 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 LYPLA2O95372 231 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 FAM107AO95990 144 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 CYP11B1P15538 503 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 CXCL9Q07325 125 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 BIRC3Q13489 604 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 SPRED3Q2MJR0 410 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 FAM83AQ86UY5 434 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 C4orf19Q8IY42 314 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 TTLL6Q8N841 843 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 ZNF564Q8TBZ8 553 aaPredicted RBP11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 PDCD2LQ9BRP1 358 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 ZNF862O60290 1169 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 MAP3K10Q02779 954 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 IFFO1Q0D2I5 559 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 SIX1Q15475 284 aaPredicted RBP11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 DAB2IPQ5VWQ8 1189 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 CCDC137Q6PK04 289 aaKnown RBP11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 NIPA1Q7RTP0 329 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 TMEM174Q8WUU8 243 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 RAPGEF5Q92565 580 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 CYFIP2Q96F07 1278 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 SYNGAP1Q96PV0 1343 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 MEFVO15553 781 aaPredicted RBP11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 TRAPPC3O43617 180 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 GRIN3BO60391 1043 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 RARAP10276 462 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 DLATP10515 647 aaKnown RBP11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 KCNA3P22001 575 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 CTNNA2P26232 953 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 SP4Q02446 784 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 IFT88Q13099 833 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 MTMR2Q13614 643 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 ALCAMQ13740 583 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 SLC29A2Q14542 456 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 LMBRD2Q68DH5 695 aaPredicted RBP11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 DDX1Q92499 740 aaKnown RBP11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 ZKSCAN4Q969J2 545 aaPredicted RBP11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 ZNF653Q96CK0 615 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 NAP1L3Q99457 506 aaPredicted RBP11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 ST6GALNAC4Q9H4F1 302 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 FZD1Q9UP38 647 aa11.17□□□□□ -0.62
CLSTN1-203ENST00000435891 TLDC2A0PJX2 215 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 WDR46O15213 610 aaKnown RBP11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 FGFR4P22455 802 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 HMGB2P26583 209 aaKnown RBP11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 PMS2P54278 862 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 PSMC5P62195 406 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 FER1L6Q2WGJ9 1857 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 AGBL2Q5U5Z8 902 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 FKBP1CQ5VVH2 108 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 B4GALNT4Q76KP1 1039 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 MCF2L2Q86YR7 1114 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 UBL4BQ8N7F7 174 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 ZBED3Q96IU2 234 aaPredicted RBP11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 TEPSINQ96N21 525 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 PXMP2Q9NR77 195 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 TBC1D22BQ9NU19 505 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 MIF4GDA9UHW6 222 aaKnown RBP11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 SPOPO43791 374 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 WNT7BP56706 349 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 SF3A3Q12874 501 aaKnown RBP eCLIP11.16□□□□□ -0.621e-8■■■□□ 18
CLSTN1-203ENST00000435891 DHX34Q14147 1143 aaKnown RBP11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 KRT39Q6A163 491 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 SV2AQ7L0J3 742 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 MAP4K3Q8IVH8 894 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 HERPUD2Q9BSE4 406 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 PABPC3Q9H361 631 aaKnown RBP11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 KIF9Q9HAQ2 790 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 SH3BP1Q9Y3L3 701 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 GMNCA6NCL1 334 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 FAM187AA6NFU0 413 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 GZMAP12544 262 aa11.16□□□□□ -0.62
CLSTN1-203ENST00000435891 DPEP1P16444 411 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms