RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 AMHP03971 560 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 ZNF131P52739 623 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 EDRF1Q3B7T1 1238 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 SPATA2LQ8IUW3 424 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-207ENST00000429896 PDGFCQ9NRA1 345 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 BUB1O43683 1085 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 NOL3O60936 208 aaKnown RBP13.82□□□□□ -0.2
PTCH1-207ENST00000429896 SLC10A3P09131 477 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 WDR72Q3MJ13 1102 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 SNX9Q9Y5X1 595 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 M0QYV0 167 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 ATP1A3P13637 1013 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 VSTM4Q8IW00 320 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 CD302Q8IX05 232 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 UBQLN1Q9UMX0 589 aaKnown RBP13.82□□□□□ -0.2
PTCH1-207ENST00000429896 EPN1Q9Y6I3 576 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-207ENST00000429896 CDR2LQ86X02 465 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-207ENST00000429896 ELOA2Q8IYF1 753 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-207ENST00000429896 SH3TC2Q8TF17 1288 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 SEPT10Q9P0V9 454 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 SAMD15Q9P1V8 674 aa13.82□□□□□ -0.2
PTCH1-207ENST00000429896 PPP1R11O60927 126 aaPredicted RBP13.81□□□□□ -0.2
PTCH1-207ENST00000429896 SGSM1Q2NKQ1 1148 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 CAPN12Q6ZSI9 719 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 PLPPR4Q7Z2D5 763 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 NECAB2Q7Z6G3 386 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 ZCCHC17Q9NP64 241 aaKnown RBP13.81□□□□□ -0.2
PTCH1-207ENST00000429896 KCNMB3Q9NPA1 279 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 PSMD10O75832 226 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 SAPCD2Q86UD0 394 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 TMEM199Q8N511 208 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 TRIM58Q8NG06 486 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 PPTC7Q8NI37 304 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 KLK14Q9P0G3 267 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 DIS3Q9Y2L1 958 aaKnown RBP13.81□□□□□ -0.2
PTCH1-207ENST00000429896 GOLGA8FQ08AF8 430 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 GOLGA8DPQ0D2H9 430 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 GKAP1Q5VSY0 366 aaPredicted RBP13.81□□□□□ -0.2
PTCH1-207ENST00000429896 TMEM35BQ8NCS4 154 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 HINFPQ9BQA5 517 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 UBN1Q9NPG3 1134 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 CAPN15O75808 1086 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 INHAP05111 366 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 GBP1P32455 592 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 GHRP10912 638 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 PAN2Q504Q3 1202 aaKnown RBP13.81□□□□□ -0.2
PTCH1-207ENST00000429896 CCDC60Q8IWA6 550 aaPredicted RBP13.81□□□□□ -0.2
PTCH1-207ENST00000429896 C10orf67Q8IYJ2 551 aa13.81□□□□□ -0.2
PTCH1-207ENST00000429896 PNPLA4P41247 253 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 NME8Q8N427 588 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 GDAP1L1Q96MZ0 367 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 MTMR9Q96QG7 549 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 DESI2Q9BSY9 194 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 DDX20Q9UHI6 824 aaKnown RBP13.8□□□□□ -0.2
PTCH1-207ENST00000429896 OGTO15294 1046 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 RARRES1P49788 294 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 SOX10P56693 466 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 TUBB4BP68371 445 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 NCOA4Q13772 614 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 LRRC43Q8N309 656 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 TBC1D31Q96DN5 1066 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 EML1O00423 815 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 PSMC6P62333 389 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 ITKQ08881 620 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 PPP1R12AO14974 1030 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-207ENST00000429896 SRGAP2BP0DMP2 458 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 GNA15P30679 374 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 TSTA3Q13630 321 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-207ENST00000429896 PLCB4Q15147 1175 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 DCP1BQ8IZD4 617 aaKnown RBP13.8□□□□□ -0.2
PTCH1-207ENST00000429896 AXLP30530 894 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 TUBB2AQ13885 445 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 SETDB1Q15047 1291 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 ARL13BQ3SXY8 428 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 SGO2Q562F6 1265 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 C10orf76Q5T2E6 689 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 TUBB2BQ9BVA1 445 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 MAGED2Q9UNF1 606 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-207ENST00000429896 PRG3Q9Y2Y8 225 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-207ENST00000429896 UBR2Q8IWV8 1755 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 MESDQ14696 234 aa13.8□□□□□ -0.2
PTCH1-207ENST00000429896 DDX41Q9UJV9 622 aaKnown RBP13.8□□□□□ -0.2
PTCH1-207ENST00000429896 GRIK1P39086 918 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 KIAA1524Q8TCG1 905 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 HAUS1Q96CS2 278 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 TMEM169Q96HH4 297 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 OGFRQ9NZT2 677 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 SCINQ9Y6U3 715 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 SAT1P21673 171 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 EIF4A3P38919 411 aaKnown RBP13.79□□□□□ -0.2
PTCH1-207ENST00000429896 LONRF2Q1L5Z9 754 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 PHLDB2Q86SQ0 1253 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 HAUS4Q9H6D7 363 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 TACC3Q9Y6A5 838 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 TOM1L1O75674 476 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 TAF6P49848 677 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 VAV2P52735 878 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 TOGARAM2Q6ZUX3 1019 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 CCDC170Q8IYT3 715 aa13.79□□□□□ -0.2
PTCH1-207ENST00000429896 CCDC89Q8N998 374 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms