RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 TMC6Q7Z403 805 aa10.53□□□□□ -0.72
RIF1-202ENST00000414861 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.53□□□□□ -0.72
RIF1-202ENST00000414861 PARD3BQ8TEW8 1205 aa10.53□□□□□ -0.72
RIF1-202ENST00000414861 PPP1R9BQ96SB3 815 aa10.53□□□□□ -0.72
RIF1-202ENST00000414861 TMEM106CQ9BVX2 250 aa10.53□□□□□ -0.72
RIF1-202ENST00000414861 SEZ6LQ9BYH1 1024 aa10.53□□□□□ -0.72
RIF1-202ENST00000414861 PDE11AQ9HCR9 933 aa10.53□□□□□ -0.72
RIF1-202ENST00000414861 RBAKQ9NYW8 714 aaPredicted RBP10.53□□□□□ -0.72
RIF1-202ENST00000414861 CPSF3Q9UKF6 684 aaKnown RBP10.53□□□□□ -0.72
RIF1-202ENST00000414861 HES2Q9Y543 173 aa10.53□□□□□ -0.72
RIF1-202ENST00000414861 PDCD11Q14690 1871 aaKnown RBP10.52□□□□□ -0.72
RIF1-202ENST00000414861 AFPP02771 609 aaKnown RBP10.52□□□□□ -0.72
RIF1-202ENST00000414861 TPM3P06753 285 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 TPM2P07951 284 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 CXCL8P10145 99 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 DLATP10515 647 aaKnown RBP10.52□□□□□ -0.72
RIF1-202ENST00000414861 MCF2P10911 925 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 TLE2Q04725 743 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 FAAP100Q0VG06 881 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 NFX1Q12986 1120 aaKnown RBP10.52□□□□□ -0.72
RIF1-202ENST00000414861 ENOX2Q16206 610 aaKnown RBP10.52□□□□□ -0.72
RIF1-202ENST00000414861 UBXN11Q5T124 520 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 LMBRD2Q68DH5 695 aaPredicted RBP10.52□□□□□ -0.72
RIF1-202ENST00000414861 SLC27A1Q6PCB7 646 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 BRSK2Q8IWQ3 736 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 CAGE1Q8TC20 777 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 CRACR2AQ9BSW2 395 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 C11orf49Q9H6J7 331 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 KIAA1586Q9HCI6 787 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 ERVK-5Q9HDB9 667 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 PCDH10Q9P2E7 1040 aa10.52□□□□□ -0.72
RIF1-202ENST00000414861 MROH7Q68CQ1 1323 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 LDHAP00338 332 aaKnown RBP10.52□□□□□ -0.73
RIF1-202ENST00000414861 GCLMP48507 274 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 MCCD1P59942 119 aaPredicted RBP10.52□□□□□ -0.73
RIF1-202ENST00000414861 APBA1Q02410 837 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 SYCP1Q15431 976 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 LRRC26Q2I0M4 334 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 C1orf53Q5VUE5 145 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 LRRC8DQ7L1W4 858 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 DRC7Q8IY82 874 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 ADPGKQ9BRR6 497 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 TMX1Q9H3N1 280 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 NXF3Q9H4D5 531 aaKnown RBP10.52□□□□□ -0.73
RIF1-202ENST00000414861 PADI3Q9ULW8 664 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 SIK3Q9Y2K2 1263 aa10.52□□□□□ -0.73
RIF1-202ENST00000414861 MGEA5O60502 916 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 STAG3L1P0CL83 205 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 EN2P19622 333 aaPredicted RBP10.51□□□□□ -0.73
RIF1-202ENST00000414861 AXLP30530 894 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 FMO5P49326 533 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 KCNMA1Q12791 1236 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 PAK2Q13177 524 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 PSMD6Q15008 389 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 FKBP15Q5T1M5 1219 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 TMC2Q8TDI7 906 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 ERGIC2Q96RQ1 377 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 CXCL16Q9H2A7 254 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 ATP11BQ9Y2G3 1177 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 EPHB6O15197 1021 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 SELPP16109 830 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 PPP2R3AQ06190 1150 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 GOLGA8FQ08AF8 430 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 GOLGA8DPQ0D2H9 430 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 GPNMBQ14956 572 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 DCAF4L1Q3SXM0 396 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 SPECC1LQ69YQ0 1117 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 TMEM130Q8N3G9 435 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 ZNF516Q92618 1163 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 TMEM117Q9H0C3 514 aa10.51□□□□□ -0.73
RIF1-202ENST00000414861 A0A1W2PQC6 194 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 PITPNM1O00562 1244 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 TLR3O15455 904 aaKnown RBP10.5□□□□□ -0.73
RIF1-202ENST00000414861 NBNO60934 754 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 LRRN2O75325 713 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 CLDN10P78369 228 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 MYL7Q01449 175 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 NCBP1Q09161 790 aaKnown RBP10.5□□□□□ -0.73
RIF1-202ENST00000414861 BFSP2Q13515 415 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 ARID5BQ14865 1188 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 SCARA3Q6AZY7 606 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 TWF2Q6IBS0 349 aaKnown RBP10.5□□□□□ -0.73
RIF1-202ENST00000414861 FAM212AQ96EL1 285 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 TOX2Q96NM4 488 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 WNT8AQ9H1J5 351 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 HIPK3Q9H422 1215 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 GCNT4Q9P109 453 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 TBX21Q9UL17 535 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 ITIH6Q6UXX5 1313 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 DCDC2CA8MYV0 355 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 GPR182O15218 404 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 GYPCP04921 128 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 CLTAP09496 248 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 GRM5P41594 1212 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 MXI1P50539 228 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 TBX2Q13207 712 aaPredicted RBP10.5□□□□□ -0.73
RIF1-202ENST00000414861 SLC10A6Q3KNW5 377 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 NECAB2Q7Z6G3 386 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 UBE2Q1Q7Z7E8 422 aa10.5□□□□□ -0.73
RIF1-202ENST00000414861 EFCAB13Q8IY85 973 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms