RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 ITGB3BPQ13352 177 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-211ENST00000413186 PRAMEF19Q5SWL8 479 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 C1orf186Q6ZWK4 172 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 C4orf32Q8N8J7 132 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 ZNF507Q8TCN5 953 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 ZNF653Q96CK0 615 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 PGAP2Q9UHJ9 254 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 LCMT1Q9UIC8 334 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 UBQLN1Q9UMX0 589 aaKnown RBP9.13□□□□□ -0.95
SYNE1-211ENST00000413186 RREB1Q92766 1687 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 A0A087WZ62 844 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 TCP1P17987 556 aaKnown RBP9.13□□□□□ -0.95
SYNE1-211ENST00000413186 EIF4A3P38919 411 aaKnown RBP9.13□□□□□ -0.95
SYNE1-211ENST00000413186 RAB27AP51159 221 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 SH3RF1Q7Z6J0 888 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 CROCCP2Q86T23 111 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 PPP1R13BQ96KQ4 1090 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 CALR3Q96L12 384 aaKnown RBP9.13□□□□□ -0.95
SYNE1-211ENST00000413186 MBOAT7Q96N66 472 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 FDXACB1Q9BRP7 624 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-211ENST00000413186 COL20A1Q9P218 1284 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 VAV3Q9UKW4 847 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 NPTXRO95502 500 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 IVLP07476 585 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 STILQ15468 1287 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 ABHD15Q6UXT9 468 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 SIX6OS1Q8N1H7 587 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 KIFC3Q9BVG8 833 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 SEZ6LQ9BYH1 1024 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 IQCGQ9H095 443 aaKnown RBP9.13□□□□□ -0.95
SYNE1-211ENST00000413186 AGAP1Q9UPQ3 857 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 SAR1BQ9Y6B6 198 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 ACKR2O00590 384 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 MAFO75444 373 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-211ENST00000413186 VTNP04004 478 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 ATICP31939 592 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 GTF2H1P32780 548 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 BEX3Q00994 111 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 NCOA4Q13772 614 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 RSRC2Q7L4I2 434 aaKnown RBP9.12□□□□□ -0.95
SYNE1-211ENST00000413186 C17orf53Q8N3J3 647 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-211ENST00000413186 TMC2Q8TDI7 906 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 SCFD1Q8WVM8 642 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 FAM149B1Q96BN6 582 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 SCINQ9Y6U3 715 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 NAV1Q8NEY1 1877 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 IGLV3-22A0A075B6J6 115 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 SEPT4O43236 478 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 STK10O94804 968 aaKnown RBP9.12□□□□□ -0.95
SYNE1-211ENST00000413186 KCNA2P16389 499 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 GABPB1Q06547 395 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-211ENST00000413186 CFAP221Q4G0U5 840 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 DNAJC24Q6P3W2 148 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 ALKBH5Q6P6C2 394 aaKnown RBP9.12□□□□□ -0.95
SYNE1-211ENST00000413186 TMEM270Q6UE05 265 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 PDZD4Q76G19 769 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-211ENST00000413186 DESI2Q9BSY9 194 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 TMEM134Q9H6X4 195 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 NHEJ1Q9H9Q4 299 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-211ENST00000413186 UBN1Q9NPG3 1134 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 RAB20Q9NX57 234 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 TRPV2Q9Y5S1 764 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 ZNF536O15090 1300 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 MCF2P10911 925 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 SARSP49591 514 aaKnown RBP9.12□□□□□ -0.95
SYNE1-211ENST00000413186 DRAP1Q14919 205 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-211ENST00000413186 PLCB4Q15147 1175 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 CXCL17Q6UXB2 119 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 ERICH1Q86X53 443 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 MAP7D3Q8IWC1 876 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 CAPZA3Q96KX2 299 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 GPR20Q99678 358 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 ITIH6Q6UXX5 1313 aa9.12□□□□□ -0.95
SYNE1-211ENST00000413186 GPR25O00155 361 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 NDUFA10O95299 355 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 KIF11P52732 1056 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 SKOR1P84550 965 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 NPY5RQ15761 445 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 WDR72Q3MJ13 1102 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 SV2CQ496J9 727 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 DNAJB3Q8WWF6 145 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 RNF14Q9UBS8 474 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 APEX2Q9UBZ4 518 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 STRIP2Q9ULQ0 834 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 TRAF3IP3Q9Y228 551 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 MROH7Q68CQ1 1323 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 NDC80O14777 642 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 CEP104O60308 925 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 PGK1P00558 417 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 PPM1FP49593 454 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-211ENST00000413186 PTGISQ16647 500 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 TTI2Q6NXR4 508 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 RHOT2Q8IXI1 618 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 RABGGTAQ92696 567 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 OSMRQ99650 979 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 SRRDQ9UH36 339 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 PCDHB7Q9Y5E2 793 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 KCNK18Q7Z418 384 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 IFT20Q8IY31 132 aa9.11□□□□□ -0.95
SYNE1-211ENST00000413186 MICAL1Q8TDZ2 1067 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms