RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 PPP1R7Q15435 360 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 HIBCHQ6NVY1 386 aaPredicted RBP6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 GJB7Q6PEY0 223 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 ARHGEF18Q6ZSZ5 1173 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 KCTD1Q719H9 257 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 TEX9Q8N6V9 391 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 GLG1Q92896 1179 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 RAB3IPQ96QF0 476 aaPredicted RBP6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 PRMT1Q99873 361 aaKnown RBP6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 DNAJC18Q9H819 358 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 KIAA1522Q9P206 1035 aaPredicted RBP6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 SNX24Q9Y343 169 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 STARD13Q9Y3M8 1113 aa6.15□□□□□ -1.43
CCDC88A-203ENST00000412148 A6NJR5 290 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 CDH16O75309 829 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 VIL1P09327 827 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 ABCD1P33897 745 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 CDR2Q01850 454 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 ICA1Q05084 483 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 STRN3Q13033 797 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 C1orf220Q5T0J3 134 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 MYCT1Q8N699 235 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 TMC2Q8TDI7 906 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 TEKT1Q969V4 418 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 TRIM7Q9C029 511 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 LRMDAQ9H2I8 198 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 CDC42EP4Q9H3Q1 356 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 TLE6Q9H808 572 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 TAS2R14Q9NYV8 317 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 CCNL1Q9UK58 526 aaPredicted RBP6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 UBAP1LF5GYI3 381 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 MEIS1O00470 390 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 CLIC2O15247 247 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 UBOX5O94941 541 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 UNC5CO95185 931 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 PTPN7P35236 360 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 SLC16A2P36021 539 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 VAMP7P51809 220 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 KCNA1Q09470 495 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 SPATA21Q7Z572 469 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 ANKS1BQ7Z6G8 1248 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 CERS5Q8N5B7 392 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 ENDOVQ8N8Q3 282 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 GPATCH11Q8N954 259 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 EPS8L3Q8TE67 593 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 DDX1Q92499 740 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 KRT35Q92764 455 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 GJA10Q969M2 543 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 FAXDC2Q96IV6 333 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 FBXL18Q96ME1 805 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 ELAC2Q9BQ52 826 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 SELENOSQ9BQE4 189 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 MFRPQ9BY79 579 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 MAP3K20Q9NYL2 800 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 CTTNBP2NLQ9P2B4 639 aa6.14□□□□□ -1.43
CCDC88A-203ENST00000412148 TMEM120BA0PK00 339 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 F5H6K3 240 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 CLGNO14967 610 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 PSTPIP1O43586 416 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ZBED4O75132 1171 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ENTPD3O75355 529 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 GAS8O95995 478 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 PYGMP11217 842 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 NMT1P30419 496 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 MFAP3P55082 362 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 NCKAP1LP55160 1127 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 IRX1P78414 480 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 FMO1Q01740 532 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 KLF1Q13351 362 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ZKSCAN8Q15776 578 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ENOX2Q16206 610 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 CCNG2Q16589 344 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 CERKLQ49MI3 558 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 LRCH2Q5VUJ6 765 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ACAD10Q6JQN1 1059 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 PALB2Q86YC2 1186 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 AGGF1Q8N302 714 aaeCLIP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ZNF564Q8TBZ8 553 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 TCP11Q8WWU5 503 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ARHGEF2Q92974 986 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 VCPIP1Q96JH7 1222 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 TTC25Q96NG3 672 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ACCSQ96QU6 501 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 WDR18Q9BV38 432 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 REPIN1Q9BWE0 567 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 RANBP17Q9H2T7 1088 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ZHX3Q9H4I2 956 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 POLD4Q9HCU8 107 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 TXLNGQ9NUQ3 528 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 SLC5A4Q9NY91 659 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 LARSQ9P2J5 1176 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 AGAP1Q9UPQ3 857 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 LRRC42Q9Y546 428 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 MROH7Q68CQ1 1323 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 GRIN3BO60391 1043 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 FAM155BO75949 473 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 ANP32DO95626 131 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 IL1BP01584 269 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 BMP3P12645 472 aa6.13□□□□□ -1.43
CCDC88A-203ENST00000412148 CLDN10P78369 228 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms