RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 PLEKHA4Q9H4M7 779 aa31.54■■■□□ 2.64
HMGB1-205ENST00000399494 TDRD15B5MCY1 1934 aaKnown RBP31.53■■■□□ 2.64
HMGB1-205ENST00000399494 CLUHO75153 1309 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 NARSO43776 548 aaKnown RBP31.53■■■□□ 2.64
HMGB1-205ENST00000399494 NPTXRO95502 500 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 TRAPPC10P48553 1259 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 USP41Q3LFD5 358 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 TTC38Q5R3I4 469 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 FUT10Q6P4F1 479 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 SMG7Q92540 1137 aaKnown RBP31.53■■■□□ 2.64
HMGB1-205ENST00000399494 STAMQ92783 540 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 NT5C3AQ9H0P0 336 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 POLR3FQ9H1D9 316 aaPredicted RBP31.53■■■□□ 2.64
HMGB1-205ENST00000399494 KLK14Q9P0G3 267 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 FNIP2Q9P278 1114 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 EPS15L1Q9UBC2 864 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 FBXL21Q9UKT6 434 aa31.53■■■□□ 2.64
HMGB1-205ENST00000399494 TGM5O43548 720 aa31.52■■■□□ 2.64
HMGB1-205ENST00000399494 ORC2Q13416 577 aaPredicted RBP31.52■■■□□ 2.64
HMGB1-205ENST00000399494 ZNF174Q15697 407 aa31.52■■■□□ 2.64
HMGB1-205ENST00000399494 SIX5Q8N196 739 aa31.52■■■□□ 2.64
HMGB1-205ENST00000399494 INTS4Q96HW7 963 aaKnown RBP31.52■■■□□ 2.64
HMGB1-205ENST00000399494 CCDC43Q96MW1 224 aaKnown RBP31.52■■■□□ 2.64
HMGB1-205ENST00000399494 MYADMQ96S97 322 aa31.52■■■□□ 2.64
HMGB1-205ENST00000399494 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP31.52■■■□□ 2.642e-6■□□□□ 10.8
HMGB1-205ENST00000399494 ADAM28Q9UKQ2 775 aa31.52■■■□□ 2.64
HMGB1-205ENST00000399494 PRR23AA6NEV1 266 aa31.51■■■□□ 2.63
HMGB1-205ENST00000399494 SPATA31C1P0DKV0 1188 aa31.51■■■□□ 2.63
HMGB1-205ENST00000399494 PDCP20941 246 aa31.51■■■□□ 2.63
HMGB1-205ENST00000399494 GRIK3Q13003 919 aa31.51■■■□□ 2.63
HMGB1-205ENST00000399494 SLC44A3Q8N4M1 653 aa31.51■■■□□ 2.63
HMGB1-205ENST00000399494 RABGGTAQ92696 567 aa31.51■■■□□ 2.63
HMGB1-205ENST00000399494 RTP3Q9BQQ7 232 aa31.51■■■□□ 2.63
HMGB1-205ENST00000399494 FOXD4L1Q9NU39 408 aa31.51■■■□□ 2.63
HMGB1-205ENST00000399494 WNT16Q9UBV4 365 aa31.51■■■□□ 2.63
HMGB1-205ENST00000399494 PARP2Q9UGN5 583 aa31.51■■■□□ 2.63
HMGB1-205ENST00000399494 CCDC105Q8IYK2 499 aa31.5■■■□□ 2.63
HMGB1-205ENST00000399494 RIN2Q8WYP3 895 aaPredicted RBP31.5■■■□□ 2.63
HMGB1-205ENST00000399494 GPRC5CQ9NQ84 441 aa31.5■■■□□ 2.63
HMGB1-205ENST00000399494 ZMYM2Q9UBW7 1377 aa31.5■■■□□ 2.63
HMGB1-205ENST00000399494 DMDP11532 3685 aa31.5■■■□□ 2.63
HMGB1-205ENST00000399494 USO1O60763 962 aaKnown RBP31.49■■■□□ 2.63
HMGB1-205ENST00000399494 POTEGQ6S5H5 508 aa31.49■■■□□ 2.63
HMGB1-205ENST00000399494 PPP4R3CPQ6ZMV5 832 aa31.49■■■□□ 2.63
HMGB1-205ENST00000399494 MAEAQ7L5Y9 396 aa31.49■■■□□ 2.63
HMGB1-205ENST00000399494 FRMD5Q7Z6J6 570 aa31.49■■■□□ 2.63
HMGB1-205ENST00000399494 GLYCTKQ8IVS8 523 aa31.49■■■□□ 2.63
HMGB1-205ENST00000399494 NXPE3Q969Y0 559 aa31.49■■■□□ 2.63
HMGB1-205ENST00000399494 TMEM60Q9H2L4 133 aa31.49■■■□□ 2.63
HMGB1-205ENST00000399494 ZDHHC7Q9NXF8 308 aa31.49■■■□□ 2.63
HMGB1-205ENST00000399494 MTCL1Q9Y4B5 1905 aaKnown RBP31.48■■■□□ 2.63
HMGB1-205ENST00000399494 POTEMA6NI47 508 aa31.48■■■□□ 2.63
HMGB1-205ENST00000399494 TADA2AO75478 443 aa31.48■■■□□ 2.63
HMGB1-205ENST00000399494 CFHP08603 1231 aa31.48■■■□□ 2.63
HMGB1-205ENST00000399494 RPL17P18621 184 aaKnown RBP31.48■■■□□ 2.63
HMGB1-205ENST00000399494 CATSPER3Q86XQ3 398 aa31.48■■■□□ 2.63
HMGB1-205ENST00000399494 PRIMPOLQ96LW4 560 aa31.48■■■□□ 2.63
HMGB1-205ENST00000399494 PAAF1Q9BRP4 392 aa31.48■■■□□ 2.63
HMGB1-205ENST00000399494 PRKD2Q9BZL6 878 aa31.48■■■□□ 2.63
HMGB1-205ENST00000399494 FZD8Q9H461 694 aa31.48■■■□□ 2.63
HMGB1-205ENST00000399494 PIDD1Q9HB75 910 aa31.48■■■□□ 2.63
HMGB1-205ENST00000399494 CACNG4Q9UBN1 327 aa31.48■■■□□ 2.63
HMGB1-205ENST00000399494 VPS37CA5D8V6 355 aaPredicted RBP31.47■■■□□ 2.63
HMGB1-205ENST00000399494 KRBA1A5PL33 1030 aa31.47■■■□□ 2.63
HMGB1-205ENST00000399494 LRRIQ4A6NIV6 560 aa31.47■■■□□ 2.63
HMGB1-205ENST00000399494 HSP90AA1P07900 732 aaKnown RBP31.47■■■□□ 2.63
HMGB1-205ENST00000399494 NBR1Q14596 966 aa31.47■■■□□ 2.63
HMGB1-205ENST00000399494 DTWD2Q8NBA8 298 aa31.47■■■□□ 2.63
HMGB1-205ENST00000399494 PRMT7Q9NVM4 692 aaPredicted RBP31.47■■■□□ 2.63
HMGB1-205ENST00000399494 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP31.47■■■□□ 2.632e-22■■■■■ 76.2
HMGB1-205ENST00000399494 OR52Z1P0C646 297 aa31.46■■■□□ 2.63
HMGB1-205ENST00000399494 LAMP2P13473 410 aa31.46■■■□□ 2.63
HMGB1-205ENST00000399494 HSP90AA2PQ14568 343 aaPredicted RBP31.46■■■□□ 2.63
HMGB1-205ENST00000399494 FAM187BQ17R55 369 aa31.46■■■□□ 2.63
HMGB1-205ENST00000399494 CDCA2Q69YH5 1023 aaPredicted RBP31.46■■■□□ 2.63
HMGB1-205ENST00000399494 SNX27Q96L92 541 aa31.46■■■□□ 2.63
HMGB1-205ENST00000399494 TUFT1Q9NNX1 390 aa31.46■■■□□ 2.63
HMGB1-205ENST00000399494 TTLL13PA6NNM8 815 aa31.45■■■□□ 2.63
HMGB1-205ENST00000399494 CREMQ03060 361 aa31.45■■■□□ 2.63
HMGB1-205ENST00000399494 TUSC3Q13454 348 aa31.45■■■□□ 2.63
HMGB1-205ENST00000399494 ANGPT1Q15389 498 aa31.45■■■□□ 2.63
HMGB1-205ENST00000399494 RILPL1Q5EBL4 403 aa31.45■■■□□ 2.63
HMGB1-205ENST00000399494 RTP2Q5QGT7 225 aa31.45■■■□□ 2.63
HMGB1-205ENST00000399494 PRSS55Q6UWB4 352 aaPredicted RBP31.45■■■□□ 2.63
HMGB1-205ENST00000399494 MCPH1Q8NEM0 835 aa31.45■■■□□ 2.63
HMGB1-205ENST00000399494 NKD2Q969F2 451 aaPredicted RBP31.45■■■□□ 2.63
HMGB1-205ENST00000399494 VPS13AQ96RL7 3174 aa31.45■■■□□ 2.62
HMGB1-205ENST00000399494 PTPRZ1P23471 2315 aaPredicted RBP31.44■■■□□ 2.62
HMGB1-205ENST00000399494 MED24O75448 989 aa31.44■■■□□ 2.62
HMGB1-205ENST00000399494 ZMYND10O75800 440 aa31.44■■■□□ 2.62
HMGB1-205ENST00000399494 TOB1P50616 345 aaPredicted RBP31.44■■■□□ 2.62
HMGB1-205ENST00000399494 NACC1Q96RE7 527 aa31.44■■■□□ 2.62
HMGB1-205ENST00000399494 PCDHB6Q9Y5E3 794 aa31.44■■■□□ 2.62
HMGB1-205ENST00000399494 PTGESO14684 152 aa31.43■■■□□ 2.62
HMGB1-205ENST00000399494 SRFP11831 508 aa31.43■■■□□ 2.62
HMGB1-205ENST00000399494 CLSTN3Q9BQT9 956 aa31.43■■■□□ 2.62
HMGB1-205ENST00000399494 POLR3CQ9BUI4 534 aaPredicted RBP31.43■■■□□ 2.62
HMGB1-205ENST00000399494 CXCL16Q9H2A7 254 aa31.43■■■□□ 2.62
HMGB1-205ENST00000399494 PDZD7Q9H5P4 517 aa31.43■■■□□ 2.62
HMGB1-205ENST00000399494 SNTG2Q9NY99 539 aa31.43■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms