RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 GRK4P32298 578 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 SOX10P56693 466 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 RBM10P98175 930 aaKnown RBP8.87□□□□□ -0.99
PTPRD-204ENST00000397606 EHHADHQ08426 723 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 SGO2Q562F6 1265 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 ABHD15Q6UXT9 468 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 TOGARAM2Q6ZUX3 1019 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 CCDC105Q8IYK2 499 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 RPUSD2Q8IZ73 545 aaKnown RBP8.87□□□□□ -0.99
PTPRD-204ENST00000397606 NME8Q8N427 588 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 KIAA0895Q8NCT3 520 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 CD99L2Q8TCZ2 262 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 TMC2Q8TDI7 906 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 HAUS1Q96CS2 278 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 RHOXF2Q9BQY4 288 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 SEMA6BQ9H3T3 888 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 PCDHB7Q9Y5E2 793 aa8.87□□□□□ -0.99
PTPRD-204ENST00000397606 MAFO75444 373 aaPredicted RBP8.86□□□□□ -0.99
PTPRD-204ENST00000397606 SPATA31C1P0DKV0 1188 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 PLCB4Q15147 1175 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 PTGISQ16647 500 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 CBWD2Q8IUF1 395 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 IFT81Q8WYA0 676 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 CARD6Q9BX69 1037 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 IGLV3-22A0A075B6J6 115 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 WNT7AO00755 349 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 MCF2P10911 925 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 KCNA2P16389 499 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 NOVP48745 357 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 NPY5RQ15761 445 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 ZNF467Q7Z7K2 595 aaPredicted RBP8.86□□□□□ -0.99
PTPRD-204ENST00000397606 GPR161Q8N6U8 529 aaKnown RBP8.86□□□□□ -0.99
PTPRD-204ENST00000397606 ERGIC2Q96RQ1 377 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 ATP11BQ9Y2G3 1177 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 VIRMAQ69YN4 1812 aaKnown RBP8.86□□□□□ -0.99
PTPRD-204ENST00000397606 LRP5O75197 1615 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 DYNC1I1O14576 645 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 ZNF500O60304 480 aaPredicted RBP8.86□□□□□ -0.99
PTPRD-204ENST00000397606 HSF2BPO75031 334 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 RAB27AP51159 221 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 NOP14P78316 857 aaKnown RBP8.86□□□□□ -0.99
PTPRD-204ENST00000397606 GCNAQ96QF7 691 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 GPR20Q99678 358 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 TRPV2Q9Y5S1 764 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 SYNJ2BP-COX16A0A087WUM0 186 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 M0QYV0 167 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 DUSP11O75319 330 aaKnown RBP8.86□□□□□ -0.99
PTPRD-204ENST00000397606 RTP1P59025 263 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 GPC5P78333 572 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 PCBP1Q15365 356 aaKnown RBP eCLIP8.86□□□□□ -0.99
PTPRD-204ENST00000397606 HSDL1Q3SXM5 330 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 CCDC14Q49A88 953 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 GJC2Q5T442 439 aaPredicted RBP8.86□□□□□ -0.99
PTPRD-204ENST00000397606 SAPCD2Q86UD0 394 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 MAP4K3Q8IVH8 894 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 MMTAG2Q9BU76 263 aaKnown RBP8.86□□□□□ -0.99
PTPRD-204ENST00000397606 NIF3L1Q9GZT8 377 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 TMEM134Q9H6X4 195 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 COX16Q9P0S2 106 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 CNOT8Q9UFF9 292 aaKnown RBP8.86□□□□□ -0.99
PTPRD-204ENST00000397606 ASIC3Q9UHC3 531 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 TLL2Q9Y6L7 1015 aa8.86□□□□□ -0.99
PTPRD-204ENST00000397606 DDX60Q8IY21 1712 aaKnown RBP8.85□□□□□ -0.99
PTPRD-204ENST00000397606 ZNF536O15090 1300 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 PQBP1O60828 265 aaKnown RBP8.85□□□□□ -0.99
PTPRD-204ENST00000397606 UPP2O95045 317 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 SMIM10L2AP0DMW4 78 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 SMIM10L2BP0DMW5 78 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 SCN4BQ8IWT1 228 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 MORF4L1Q9UBU8 362 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 WNK3Q9BYP7 1800 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 TYW5A2RUC4 315 aaKnown RBP8.85□□□□□ -0.99
PTPRD-204ENST00000397606 MAP2K2P36507 400 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 SLC27A1Q6PCB7 646 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 KLHL7Q8IXQ5 586 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 HPDLQ96IR7 371 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 UBN1Q9NPG3 1134 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 JRKLQ9Y4A0 524 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 KRIT1O00522 736 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 CCNE2O96020 404 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 ELNP15502 786 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 SLC9A1P19634 815 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 TAF6P49848 677 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 IFT20Q8IY31 132 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 CCDC89Q8N998 374 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 ZC3H11AO75152 810 aaKnown RBP eCLIP8.85□□□□□ -0.99
PTPRD-204ENST00000397606 SLC10A3P09131 477 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 MYBL1P10243 752 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 CPB1P15086 417 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 PCSK1P29120 753 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 SLC35F6Q8N357 371 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 GRK7Q8WTQ7 553 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 MBOAT7Q96N66 472 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 CGRRF1Q99675 332 aa8.85□□□□□ -0.99
PTPRD-204ENST00000397606 BCCIPQ9P287 314 aaKnown RBP eCLIP8.85□□□□□ -0.99
PTPRD-204ENST00000397606 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.85□□□□□ -0.99
PTPRD-204ENST00000397606 V9GYY5 206 aaPredicted RBP8.85□□□□□ -0.99
PTPRD-204ENST00000397606 COL1A2P08123 1366 aa8.84□□□□□ -0.99
PTPRD-204ENST00000397606 BAZ2AQ9UIF9 1905 aaKnown RBP8.84□□□□□ -0.99
PTPRD-204ENST00000397606 A0A1W2PQJ5 194 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms