RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 DNAJB4Q9UDY4 337 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 LZTS1Q9Y250 596 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 GDAQ9Y2T3 454 aa23.77■■□□□ 1.4
CLN3-207ENST00000395653 PRRC2BQ5JSZ5 2229 aaKnown RBP23.77■■□□□ 1.4
CLN3-207ENST00000395653 GCNT3O95395 438 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 GALTP07902 379 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 AFMP43652 599 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 DSC1Q08554 894 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 TIGD5Q53EQ6 642 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 UNC13DQ70J99 1090 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 MICALL1Q8N3F8 863 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 POF1BQ8WVV4 589 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 GOLPH3LQ9H4A5 285 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 TBC1D7Q9P0N9 293 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 PCDHB13Q9Y5F0 798 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 EYSQ5T1H1 3165 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 GOLGA6L4A6NEF3 574 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 CAMK1Q14012 370 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 PAGE5Q96GU1 130 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 BLZF1Q9H2G9 400 aa23.76■■□□□ 1.39
CLN3-207ENST00000395653 TOPORSQ9NS56 1045 aaPredicted RBP23.76■■□□□ 1.39
CLN3-207ENST00000395653 PLXNA4Q9HCM2 1894 aa23.75■■□□□ 1.39
CLN3-207ENST00000395653 PVALEFA0A1B0GWK0 134 aa23.75■■□□□ 1.39
CLN3-207ENST00000395653 MYL1P05976 194 aa23.75■■□□□ 1.39
CLN3-207ENST00000395653 HARSP12081 509 aaKnown RBP23.75■■□□□ 1.39
CLN3-207ENST00000395653 DNAJB1P25685 340 aa23.75■■□□□ 1.39
CLN3-207ENST00000395653 SLC11A1P49279 550 aa23.75■■□□□ 1.39
CLN3-207ENST00000395653 YARSP54577 528 aaKnown RBP23.75■■□□□ 1.39
CLN3-207ENST00000395653 KRT17Q04695 432 aa23.75■■□□□ 1.39
CLN3-207ENST00000395653 CUL4BQ13620 913 aa23.75■■□□□ 1.39
CLN3-207ENST00000395653 L1TD1Q5T7N2 865 aaKnown RBP23.75■■□□□ 1.39
CLN3-207ENST00000395653 COLGALT2Q8IYK4 626 aa23.75■■□□□ 1.39
CLN3-207ENST00000395653 ACAP3Q96P50 834 aa23.75■■□□□ 1.39
CLN3-207ENST00000395653 HAPLN2Q9GZV7 340 aa23.75■■□□□ 1.39
CLN3-207ENST00000395653 PUF60Q9UHX1 559 aaKnown RBP23.75■■□□□ 1.39
CLN3-207ENST00000395653 EXOC7Q9UPT5 735 aa23.75■■□□□ 1.39
CLN3-207ENST00000395653 NT5C1B-RDH14C9J2C7 533 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 PTGESO14684 152 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 ALDH2P05091 517 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 CASP1P29466 404 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 MATR3P43243 847 aaKnown RBP eCLIP23.74■■□□□ 1.39
CLN3-207ENST00000395653 CASP5P51878 434 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 OSTNP61366 133 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 EHHADHQ08426 723 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 CCDC85BQ15834 202 aaPredicted RBP23.74■■□□□ 1.39
CLN3-207ENST00000395653 TPRNQ4KMQ1 711 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 SLC39A4Q6P5W5 647 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 STXBP4Q6ZWJ1 553 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 GRAMD1CQ8IYS0 662 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 PPM1EQ8WY54 764 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 TMEM169Q96HH4 297 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 IGSF21Q96ID5 467 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 ACCSQ96QU6 501 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 FGFBP2Q9BYJ0 223 aa23.74■■□□□ 1.39
CLN3-207ENST00000395653 TDRD15B5MCY1 1934 aaKnown RBP23.73■■□□□ 1.39
CLN3-207ENST00000395653 THP07101 528 aa23.73■■□□□ 1.39
CLN3-207ENST00000395653 MYBP10242 640 aa23.73■■□□□ 1.39
CLN3-207ENST00000395653 KYAT1Q16773 422 aa23.73■■□□□ 1.39
CLN3-207ENST00000395653 XKR4Q5GH76 650 aa23.73■■□□□ 1.39
CLN3-207ENST00000395653 FAM26FQ5R3K3 315 aa23.73■■□□□ 1.39
CLN3-207ENST00000395653 KRBA2Q6ZNG9 492 aa23.73■■□□□ 1.39
CLN3-207ENST00000395653 TMEM173Q86WV6 379 aaPredicted RBP23.73■■□□□ 1.39
CLN3-207ENST00000395653 NSUN3Q9H649 340 aaKnown RBP23.73■■□□□ 1.39
CLN3-207ENST00000395653 TLR9Q9NR96 1032 aa23.73■■□□□ 1.39
CLN3-207ENST00000395653 FAN1Q9Y2M0 1017 aa23.73■■□□□ 1.39
CLN3-207ENST00000395653 STYXL1Q9Y6J8 313 aa23.73■■□□□ 1.39
CLN3-207ENST00000395653 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.72■■□□□ 1.39
CLN3-207ENST00000395653 A0A0B4J269 797 aa23.72■■□□□ 1.39
CLN3-207ENST00000395653 NRP1O14786 923 aa23.72■■□□□ 1.39
CLN3-207ENST00000395653 NR1I2O75469 434 aa23.72■■□□□ 1.39
CLN3-207ENST00000395653 ZNF202O95125 648 aa23.72■■□□□ 1.39
CLN3-207ENST00000395653 KCNA1Q09470 495 aa23.72■■□□□ 1.39
CLN3-207ENST00000395653 TUSC3Q13454 348 aa23.72■■□□□ 1.39
CLN3-207ENST00000395653 SLFN12LQ6IEE8 588 aa23.72■■□□□ 1.39
CLN3-207ENST00000395653 ALKAL1Q6UXT8 129 aa23.72■■□□□ 1.39
CLN3-207ENST00000395653 HPS3Q969F9 1004 aa23.72■■□□□ 1.39
CLN3-207ENST00000395653 SNX27Q96L92 541 aa23.72■■□□□ 1.39
CLN3-207ENST00000395653 CXCL16Q9H2A7 254 aa23.72■■□□□ 1.39
CLN3-207ENST00000395653 ANKRD63C9JTQ0 380 aa23.71■■□□□ 1.39
CLN3-207ENST00000395653 OGTO15294 1046 aa23.71■■□□□ 1.39
CLN3-207ENST00000395653 FAM189A1O60320 539 aa23.71■■□□□ 1.39
CLN3-207ENST00000395653 CLTAP09496 248 aa23.71■■□□□ 1.39
CLN3-207ENST00000395653 OR1G1P47890 313 aa23.71■■□□□ 1.39
CLN3-207ENST00000395653 NAB2Q15742 525 aa23.71■■□□□ 1.39
CLN3-207ENST00000395653 PDE12Q6L8Q7 609 aaKnown RBP23.71■■□□□ 1.39
CLN3-207ENST00000395653 MSTO1Q9BUK6 570 aa23.71■■□□□ 1.39
CLN3-207ENST00000395653 TMEM206Q9H813 350 aa23.71■■□□□ 1.39
CLN3-207ENST00000395653 STK39Q9UEW8 545 aa23.71■■□□□ 1.39
CLN3-207ENST00000395653 ATG2AQ2TAZ0 1938 aa23.7■■□□□ 1.39
CLN3-207ENST00000395653 EIF3DO15371 548 aaKnown RBP eCLIP23.7■■□□□ 1.38
CLN3-207ENST00000395653 IRS1P35568 1242 aa23.7■■□□□ 1.38
CLN3-207ENST00000395653 SEZ6Q53EL9 994 aa23.7■■□□□ 1.38
CLN3-207ENST00000395653 DDX53Q86TM3 631 aaKnown RBP23.7■■□□□ 1.38
CLN3-207ENST00000395653 BCL7CQ8WUZ0 217 aaPredicted RBP23.7■■□□□ 1.38
CLN3-207ENST00000395653 CCDC34Q96HJ3 373 aa23.7■■□□□ 1.38
CLN3-207ENST00000395653 PPP1R10Q96QC0 940 aaKnown RBP23.7■■□□□ 1.38
CLN3-207ENST00000395653 MARCH5Q9NX47 278 aa23.7■■□□□ 1.38
CLN3-207ENST00000395653 CNTN3Q9P232 1028 aa23.7■■□□□ 1.38
CLN3-207ENST00000395653 PRG3Q9Y2Y8 225 aaPredicted RBP23.7■■□□□ 1.38
CLN3-207ENST00000395653 SMIM28A0A1B0GU29 152 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms