RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 CD58P19256 250 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 TNFSF9P41273 254 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 CARSP49589 748 aaKnown RBP11.99□□□□□ -0.49
TCOF1-203ENST00000394269 LLGL2Q6P1M3 1020 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 METTL7BQ6UX53 244 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 DDX42Q86XP3 938 aaKnown RBP eCLIP11.99□□□□□ -0.49
TCOF1-203ENST00000394269 CPNE8Q86YQ8 564 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 RFFLQ8WZ73 363 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 NMRK2Q9NPI5 230 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 ARHGAP28Q9P2N2 729 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 COG5Q9UP83 839 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 MYPNQ86TC9 1320 aa11.99□□□□□ -0.49
TCOF1-203ENST00000394269 CXCL11O14625 94 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 EDN1P05305 212 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 MCM3P25205 808 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 CAPSQ13938 189 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 WDR93Q6P2C0 686 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 C12orf56Q8IXR9 622 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 EPS8L1Q8TE68 723 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 HNRNPLLQ8WVV9 542 aaKnown RBP11.98□□□□□ -0.49
TCOF1-203ENST00000394269 ZNF653Q96CK0 615 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 MPHOSPH6Q99547 160 aaKnown RBP11.98□□□□□ -0.49
TCOF1-203ENST00000394269 DHX33Q9H6R0 707 aaKnown RBP11.98□□□□□ -0.49
TCOF1-203ENST00000394269 PDLIM7Q9NR12 457 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 FAN1Q9Y2M0 1017 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 ANKRD62A6NC57 917 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 CNMDO75829 334 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 HLA-DRAP01903 254 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 CYP11B1P15538 503 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 TFAMQ00059 246 aaKnown RBP11.98□□□□□ -0.49
TCOF1-203ENST00000394269 TERF2Q15554 542 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 DNAJC21Q5F1R6 531 aaKnown RBP11.98□□□□□ -0.49
TCOF1-203ENST00000394269 TMEM270Q6UE05 265 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 LRRC57Q8N9N7 239 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 HAPLN2Q9GZV7 340 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 AMACRQ9UHK6 382 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 SPOPO43791 374 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 EXTL3O43909 919 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 GJA5P36382 358 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 GJC1P36383 396 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 ERVK-9P63128 1117 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 ZFYVE27Q5T4F4 411 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 FASTKD5Q7L8L6 764 aaKnown RBP11.98□□□□□ -0.49
TCOF1-203ENST00000394269 SYCE1Q8N0S2 351 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 MMGT1Q8N4V1 131 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 OR5B17Q8NGF7 314 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 CENPHQ9H3R5 247 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 NOC2LQ9Y3T9 749 aaKnown RBP11.98□□□□□ -0.49
TCOF1-203ENST00000394269 ALG6Q9Y672 507 aa11.98□□□□□ -0.49
TCOF1-203ENST00000394269 RAD51CO43502 376 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 KRT19P08727 400 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 TMEM253P0C7T8 217 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 SCARA5Q6ZMJ2 495 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 NT5DC3Q86UY8 548 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 USP38Q8NB14 1042 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 HELQQ8TDG4 1101 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 CELF4Q9BZC1 486 aaKnown RBP11.97□□□□□ -0.49
TCOF1-203ENST00000394269 PCDHB4Q9Y5E5 795 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 IVNS1ABPQ9Y6Y0 642 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 PTPRJQ12913 1337 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 MAP2K7O14733 419 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 SLC25A27O95847 323 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 TUBBP07437 444 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 ICAM3P32942 547 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 LMAN1P49257 510 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 GPC5P78333 572 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 SNAPC2Q13487 334 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 KIF22Q14807 665 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 TDRD10Q5VZ19 366 aaKnown RBP11.97□□□□□ -0.49
TCOF1-203ENST00000394269 DPP9Q86TI2 863 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 TMEM130Q8N3G9 435 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 GOLGA6L1Q8N7Z2 621 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 PSPC1Q8WXF1 523 aaKnown RBP11.97□□□□□ -0.49
TCOF1-203ENST00000394269 MFSD14AQ96MC6 490 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 DPH5Q9H2P9 285 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 SUCLA2Q9P2R7 463 aaPredicted RBP11.97□□□□□ -0.49
TCOF1-203ENST00000394269 NR2E1Q9Y466 385 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 DOCK5Q9H7D0 1870 aa11.97□□□□□ -0.49
TCOF1-203ENST00000394269 PGRMC1O00264 195 aaKnown RBP11.96□□□□□ -0.49
TCOF1-203ENST00000394269 P4HA2O15460 535 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 ATP8B1O43520 1251 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 GARTP22102 1010 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 NAMPTP43490 491 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 MARCKSL1P49006 195 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 TNNC1P63316 161 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 LAMTOR4Q0VGL1 99 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 DAB2IPQ5VWQ8 1189 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 USP50Q70EL3 339 aaPredicted RBP11.96□□□□□ -0.49
TCOF1-203ENST00000394269 DPH6Q7L8W6 267 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 FAM71AQ8IYT1 594 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 CEP120Q8N960 986 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 GPR20Q99678 358 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 NUP85Q9BW27 656 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 RNPEPQ9H4A4 650 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 KIF13BQ9NQT8 1826 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 H0YCG3 227 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 PDHXO00330 501 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 B4GALT5O43286 388 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 SART1O43290 800 aaKnown RBP11.96□□□□□ -0.49
TCOF1-203ENST00000394269 CHRNB2P17787 502 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms