RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 C11orf96Q7Z7L8 435 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 FAM133AQ8N9E0 248 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 DNAJB3Q8WWF6 145 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 PANK2Q9BZ23 570 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 ASAH2Q9NR71 780 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 SMIM35A0A1B0GVV1 85 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 B4E1Z4 1266 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 C2CD2LO14523 706 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 RNASEH1O60930 286 aaKnown RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 ABL1P00519 1130 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 CYP2D6P10635 497 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 ST8SIA6P61647 398 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 CSTF1Q05048 431 aaKnown RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 MUM1Q2TAK8 710 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 UVSSAQ2YD98 709 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 FAM178BQ8IXR5 827 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 BEST2Q8NFU1 509 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 DDX50Q9BQ39 737 aaKnown RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 CCDC113Q9H0I3 377 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 TXNRD2Q9NNW7 524 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 FAM86C2PA6NEL3 165 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 GRXCR1A8MXD5 290 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 EBAG9O00559 213 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 B4GALT4O60513 344 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 HNRNPA1P09651 372 aaKnown RBP eCLIP8.72□□□□□ -1.01
LIMS1-203ENST00000393310 SRGAP2CP0DJJ0 459 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 EFNA5P52803 228 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 APOBRQ0VD83 1088 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 LHX8Q68G74 356 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 SMYD5Q6GMV2 418 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 SHQ1Q6PI26 577 aaKnown RBP8.72□□□□□ -1.01
LIMS1-203ENST00000393310 PHLDB2Q86SQ0 1253 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 VPS52Q8N1B4 723 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 CCDC63Q8NA47 563 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 TAF4BQ92750 862 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 PYM1Q9BRP8 204 aaKnown RBP8.72□□□□□ -1.01
LIMS1-203ENST00000393310 GRXCR2A6NFK2 248 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 H0Y626 953 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 STX6O43752 255 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 COQ9O75208 318 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 TRIM16O95361 564 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 ZNF865P0CJ78 1059 aaPredicted RBP8.72□□□□□ -1.01
LIMS1-203ENST00000393310 CKBP12277 381 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 TERF2Q15554 542 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 UROC1Q96N76 676 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 RSAD1Q9HA92 442 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 EMC3Q9P0I2 261 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 NDRG2Q9UN36 371 aaKnown RBP8.72□□□□□ -1.01
LIMS1-203ENST00000393310 KHNYNO15037 678 aaKnown RBP8.72□□□□□ -1.01
LIMS1-203ENST00000393310 B3GALNT1O75752 331 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 TSPAN9O75954 239 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 MOCS3O95396 460 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 TRPC3Q13507 836 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 PTPN21Q16825 1174 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 MGARPQ8TDB4 240 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 ATP8B4Q8TF62 1192 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 DEPDC1BQ8WUY9 529 aa8.72□□□□□ -1.01
LIMS1-203ENST00000393310 RIN2Q8WYP3 895 aaPredicted RBP8.72□□□□□ -1.01
LIMS1-203ENST00000393310 TRMT61BQ9BVS5 477 aaKnown RBP8.72□□□□□ -1.01
LIMS1-203ENST00000393310 SMIM24O75264 130 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 CDC45O75419 566 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 SERPINC1P01008 464 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 NAT2P11245 290 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 CXCL12P48061 93 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 TUFMP49411 452 aaKnown RBP8.71□□□□□ -1.01
LIMS1-203ENST00000393310 TNIP2Q8NFZ5 429 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 GOLGA5Q8TBA6 731 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 BAP1Q92560 729 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 FBXL18Q96ME1 805 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 ANGPTL2Q9UKU9 493 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 NCKAP1Q9Y2A7 1128 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 ZNF831Q5JPB2 1677 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 MEI4A8MW99 385 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 SYNCRIPO60506 623 aaKnown RBP8.71□□□□□ -1.01
LIMS1-203ENST00000393310 RPL17P18621 184 aaKnown RBP8.71□□□□□ -1.01
LIMS1-203ENST00000393310 MCM3P25205 808 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 NLRP11P59045 1033 aaKnown RBP8.71□□□□□ -1.01
LIMS1-203ENST00000393310 LMAN2Q12907 356 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 PRR16Q569H4 304 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 PI16Q6UXB8 463 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 ANKS3Q6ZW76 656 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 TMC6Q7Z403 805 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 KLHDC9Q8NEP7 349 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 B4GALNT2Q8NHY0 566 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 OSBPL9Q96SU4 736 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 MTRQ99707 1265 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 PDCD2LQ9BRP1 358 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 DRC3Q9H069 523 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 VCX3AQ9NNX9 186 aa8.71□□□□□ -1.01
LIMS1-203ENST00000393310 PRMT7Q9NVM4 692 aaPredicted RBP8.71□□□□□ -1.01
LIMS1-203ENST00000393310 SUCLA2Q9P2R7 463 aaPredicted RBP8.71□□□□□ -1.01
LIMS1-203ENST00000393310 SCN7AQ01118 1682 aa8.71□□□□□ -1.02
LIMS1-203ENST00000393310 TACC1O75410 805 aa8.71□□□□□ -1.02
LIMS1-203ENST00000393310 FGF18O76093 207 aa8.71□□□□□ -1.02
LIMS1-203ENST00000393310 POMCP01189 267 aa8.71□□□□□ -1.02
LIMS1-203ENST00000393310 ZNF286BP0CG31 522 aa8.71□□□□□ -1.02
LIMS1-203ENST00000393310 GFAPP14136 432 aa8.71□□□□□ -1.02
LIMS1-203ENST00000393310 CETN2P41208 172 aa8.71□□□□□ -1.02
LIMS1-203ENST00000393310 USP4Q13107 963 aa8.71□□□□□ -1.02
LIMS1-203ENST00000393310 DCAF4L1Q3SXM0 396 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms