RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 CDK5RAP3Q96JB5 506 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 TAOK3Q9H2K8 898 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 AAASQ9NRG9 546 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 METTL5Q9NRN9 209 aaKnown RBP15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 AJAP1Q9UKB5 411 aaPredicted RBP15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 IGSF9BQ9UPX0 1349 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 KRT36O76013 467 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 HSPA6P17066 643 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 WDR4P57081 412 aaKnown RBP15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 AP1B1Q10567 949 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 NONOQ15233 471 aaKnown RBP eCLIP15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 ZRSR2Q15696 482 aaKnown RBP15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 GSTA3Q16772 222 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 PPP1R21Q6ZMI0 780 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 KRT25Q7Z3Z0 450 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 ZC3H3Q8IXZ2 948 aaKnown RBP15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 LNX1Q8TBB1 728 aaPredicted RBP15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 NR1H4Q96RI1 486 aaPredicted RBP15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 MIPEPQ99797 713 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 TMOD4Q9NZQ9 345 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 LNPEPQ9UIQ6 1025 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 ZNF510Q9Y2H8 683 aa15.66■□□□□ 0.1
VPS9D1-201ENST00000389386 LYNP07948 512 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 TSPY3P0CV98 308 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 TSPY8P0CW00 308 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 JAM2P57087 298 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 IL9RQ01113 521 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 CERKLQ49MI3 558 aaPredicted RBP15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 SBK1Q52WX2 424 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 SPDYAQ5MJ70 313 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 MFSD14BQ5SR56 506 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 CCDC137Q6PK04 289 aaKnown RBP15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 CYFIP1Q7L576 1253 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 NEK8Q86SG6 692 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 DDX50Q9BQ39 737 aaKnown RBP15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 MXD3Q9BW11 206 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 LRRC27Q9C0I9 530 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 PICK1Q9NRD5 415 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 GGA1Q9UJY5 639 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 PHTF1Q9UMS5 762 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 CAPN9O14815 690 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 MAFGO15525 162 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 TBX10O75333 385 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 TMEM253P0C7T8 217 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 UBTFL6P0CB48 400 aaPredicted RBP15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 CHRNA5P30532 468 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 TNIP1Q15025 636 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 EXOC3L4Q17RC7 722 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 NUDT12Q9BQG2 462 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 KCTD10Q9H3F6 313 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 METTL14Q9HCE5 456 aaKnown RBP15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 DDX43Q9NXZ2 648 aaKnown RBP15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 HDAC9Q9UKV0 1011 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 COMMD3-BMI1R4GMX3 469 aa15.65■□□□□ 0.1
VPS9D1-201ENST00000389386 CYTH3O43739 400 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 TCEA3O75764 348 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 ACSBG2Q5FVE4 666 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 KBTBD2Q8IY47 623 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 MTMR9Q96QG7 549 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 CCDC28BQ9BUN5 200 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 RTFDC1Q9BY42 306 aaPredicted RBP15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 CADM1Q9BY67 442 aaKnown RBP15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 TBC1D7Q9P0N9 293 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 LARSQ9P2J5 1176 aaKnown RBP15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 TP73O15350 636 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 INHBCP55103 352 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 DNAJC3Q13217 504 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 WDR72Q3MJ13 1102 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 MYLK4Q86YV6 388 aaPredicted RBP15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 SRRM1Q8IYB3 904 aaKnown RBP15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 ZNF444Q8N0Y2 327 aaPredicted RBP15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 SIX2Q9NPC8 291 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 KRT82Q9NSB4 513 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 LGALS13Q9UHV8 139 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 ADGRA3Q8IWK6 1321 aa15.64■□□□□ 0.09
VPS9D1-201ENST00000389386 FAM196BA6NMK8 535 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 SPATA31D3P0C874 917 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 FAM200BP0CF97 657 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 SLURP2P0DP57 97 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 HMGB2P26583 209 aaKnown RBP15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 FXR2P51116 673 aaKnown RBP eCLIP15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 GTF2IP78347 998 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 PICALMQ13492 652 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 DBN1Q16643 649 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 LIN52Q52LA3 116 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 TAF1BQ53T94 588 aaPredicted RBP15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 SPATA31D4Q6ZUB0 917 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 PPFIBP2Q8ND30 876 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 C10orf82Q8WW14 230 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 ZNF184Q99676 751 aaPredicted RBP15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 SLCO1B3Q9NPD5 702 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 PCDHA2Q9Y5H9 948 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 GMEB1Q9Y692 573 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 KIF13BQ9NQT8 1826 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 ANKRD31Q8N7Z5 1873 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 KIAA1551Q9HCM1 1747 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 SYNGAP1Q96PV0 1343 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 MAP3K7O43318 606 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 ATP6V1G1O75348 118 aa15.63■□□□□ 0.09
VPS9D1-201ENST00000389386 GFPT2O94808 682 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms