RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 KIFAP3Q92845 792 aa23.21■■□□□ 1.31
VSX1-201ENST00000376707 UPF2Q9HAU5 1272 aaKnown RBP23.21■■□□□ 1.31
VSX1-201ENST00000376707 DDX19AQ9NUU7 478 aaKnown RBP23.21■■□□□ 1.31
VSX1-201ENST00000376707 SNTG2Q9NY99 539 aa23.21■■□□□ 1.31
VSX1-201ENST00000376707 USP20Q9Y2K6 914 aa23.21■■□□□ 1.31
VSX1-201ENST00000376707 KIF3AQ9Y496 699 aa23.21■■□□□ 1.31
VSX1-201ENST00000376707 SF3B1O75533 1304 aaKnown RBP eCLIP23.2■■□□□ 1.3
VSX1-201ENST00000376707 CCDC195A0A1B0GUA6 201 aa23.2■■□□□ 1.3
VSX1-201ENST00000376707 RECQL4O94761 1208 aa23.2■■□□□ 1.3
VSX1-201ENST00000376707 MYBP10242 640 aa23.2■■□□□ 1.3
VSX1-201ENST00000376707 EFNA5P52803 228 aa23.2■■□□□ 1.3
VSX1-201ENST00000376707 VCPP55072 806 aaKnown RBP23.2■■□□□ 1.3
VSX1-201ENST00000376707 PALB2Q86YC2 1186 aa23.2■■□□□ 1.3
VSX1-201ENST00000376707 KIFC3Q9BVG8 833 aa23.2■■□□□ 1.3
VSX1-201ENST00000376707 POLD4Q9HCU8 107 aa23.2■■□□□ 1.3
VSX1-201ENST00000376707 CACNG4Q9UBN1 327 aa23.2■■□□□ 1.3
VSX1-201ENST00000376707 PCDHB6Q9Y5E3 794 aa23.2■■□□□ 1.3
VSX1-201ENST00000376707 TDRD15B5MCY1 1934 aaKnown RBP23.2■■□□□ 1.3
VSX1-201ENST00000376707 CASTOR2A6NHX0 329 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 PDGFBP01127 241 aaPredicted RBP23.19■■□□□ 1.3
VSX1-201ENST00000376707 THP07101 528 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 AVPR2P30518 371 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 MRE11P49959 708 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 TOB1P50616 345 aaPredicted RBP23.19■■□□□ 1.3
VSX1-201ENST00000376707 CREMQ03060 361 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 CYP26C1Q6V0L0 522 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 GLYCTKQ8IVS8 523 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 GPR65Q8IYL9 337 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 IGSF22Q8N9C0 903 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 PAAF1Q9BRP4 392 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 SMOC2Q9H3U7 446 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 FNIP2Q9P278 1114 aa23.19■■□□□ 1.3
VSX1-201ENST00000376707 LAD1O00515 517 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 PTGESO14684 152 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 SPATA31D3P0C874 917 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 DCAF4L1Q3SXM0 396 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 KRT79Q5XKE5 535 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 EEF1DP3Q658K8 133 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 SPATA31D4Q6ZUB0 917 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 HASPINQ8TF76 798 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 HDAC7Q8WUI4 952 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 TMX3Q96JJ7 454 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 PLEKHA4Q9H4M7 779 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 DNM3Q9UQ16 869 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 GDAQ9Y2T3 454 aa23.18■■□□□ 1.3
VSX1-201ENST00000376707 TGM5O43548 720 aa23.17■■□□□ 1.3
VSX1-201ENST00000376707 RFPL2O75678 378 aa23.17■■□□□ 1.3
VSX1-201ENST00000376707 CD2BP2O95400 341 aaKnown RBP23.17■■□□□ 1.3
VSX1-201ENST00000376707 C1RP00736 705 aa23.17■■□□□ 1.3
VSX1-201ENST00000376707 EDN1P05305 212 aa23.17■■□□□ 1.3
VSX1-201ENST00000376707 ATF7IP2Q5U623 682 aa23.17■■□□□ 1.3
VSX1-201ENST00000376707 APBB1IPQ7Z5R6 666 aaPredicted RBP23.17■■□□□ 1.3
VSX1-201ENST00000376707 SMG7Q92540 1137 aaKnown RBP23.17■■□□□ 1.3
VSX1-201ENST00000376707 DAXXQ9UER7 740 aaPredicted RBP23.17■■□□□ 1.3
VSX1-201ENST00000376707 K7ERI5 159 aa23.16■■□□□ 1.3
VSX1-201ENST00000376707 KIF4AO95239 1232 aa23.16■■□□□ 1.3
VSX1-201ENST00000376707 RPL17P18621 184 aaKnown RBP23.16■■□□□ 1.3
VSX1-201ENST00000376707 MCM2P49736 904 aa23.16■■□□□ 1.3
VSX1-201ENST00000376707 RTP2Q5QGT7 225 aa23.16■■□□□ 1.3
VSX1-201ENST00000376707 MCTP1Q6DN14 999 aa23.16■■□□□ 1.3
VSX1-201ENST00000376707 PRSS55Q6UWB4 352 aaPredicted RBP23.16■■□□□ 1.3
VSX1-201ENST00000376707 DTHD1Q6ZMT9 781 aa23.16■■□□□ 1.3
VSX1-201ENST00000376707 STAMQ92783 540 aa23.16■■□□□ 1.3
VSX1-201ENST00000376707 TBC1D32Q96NH3 1257 aa23.16■■□□□ 1.3
VSX1-201ENST00000376707 RHOBTB2Q9BYZ6 727 aa23.16■■□□□ 1.3
VSX1-201ENST00000376707 PIDD1Q9HB75 910 aa23.16■■□□□ 1.3
VSX1-201ENST00000376707 WDR6Q9NNW5 1121 aaKnown RBP23.16■■□□□ 1.3
VSX1-201ENST00000376707 DENND4AQ7Z401 1863 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 CLUHO75153 1309 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 CCDC169A6NNP5 214 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 PP2D1A8MPX8 630 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 E9PMD0 336 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 GBP2P32456 591 aaPredicted RBP23.15■■□□□ 1.3
VSX1-201ENST00000376707 PRPHP41219 470 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 TCF15Q12870 199 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 NT5DC1Q5TFE4 455 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 FAM171A1Q5VUB5 890 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 CEP57Q86XR8 500 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 TTPALQ9BTX7 342 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 CXCL16Q9H2A7 254 aa23.15■■□□□ 1.3
VSX1-201ENST00000376707 WDFY4Q6ZS81 3184 aa23.14■■□□□ 1.3
VSX1-201ENST00000376707 PIEZO1Q92508 2521 aa23.14■■□□□ 1.3
VSX1-201ENST00000376707 PEX3P56589 373 aa23.14■■□□□ 1.29
VSX1-201ENST00000376707 ELAVL2Q12926 359 aaKnown RBP23.14■■□□□ 1.29
VSX1-201ENST00000376707 TDGQ13569 410 aa23.14■■□□□ 1.29
VSX1-201ENST00000376707 NAB2Q15742 525 aa23.14■■□□□ 1.29
VSX1-201ENST00000376707 LILRA6Q6PI73 481 aa23.14■■□□□ 1.29
VSX1-201ENST00000376707 ZNF707Q96C28 371 aaPredicted RBP23.14■■□□□ 1.29
VSX1-201ENST00000376707 NT5C3AQ9H0P0 336 aa23.14■■□□□ 1.29
VSX1-201ENST00000376707 MFSD1Q9H3U5 465 aa23.14■■□□□ 1.29
VSX1-201ENST00000376707 KCNK12Q9HB15 430 aa23.14■■□□□ 1.29
VSX1-201ENST00000376707 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.14■■□□□ 1.29
VSX1-201ENST00000376707 ZDHHC7Q9NXF8 308 aa23.14■■□□□ 1.29
VSX1-201ENST00000376707 ZDBF2Q9HCK1 2354 aa23.14■■□□□ 1.29
VSX1-201ENST00000376707 PLXNA3P51805 1871 aa23.13■■□□□ 1.29
VSX1-201ENST00000376707 KMT2EQ8IZD2 1858 aa23.13■■□□□ 1.29
VSX1-201ENST00000376707 PHLPP2Q6ZVD8 1323 aa23.13■■□□□ 1.29
VSX1-201ENST00000376707 HIP1RO75146 1068 aa23.13■■□□□ 1.29
VSX1-201ENST00000376707 CDC25AP30304 524 aa23.13■■□□□ 1.29
VSX1-201ENST00000376707 NPTX2P47972 431 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms