RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 A8MUI8 341 aa11.9□□□□□ -0.51
CCDC40-203ENST00000374877 FOXN3O00409 490 aaPredicted RBP11.9□□□□□ -0.51
CCDC40-203ENST00000374877 RARGP13631 454 aa11.9□□□□□ -0.51
CCDC40-203ENST00000374877 HSPA6P17066 643 aa11.9□□□□□ -0.51
CCDC40-203ENST00000374877 CALCOCO2Q13137 446 aa11.9□□□□□ -0.51
CCDC40-203ENST00000374877 ZNF268Q14587 947 aaPredicted RBP11.9□□□□□ -0.51
CCDC40-203ENST00000374877 USH1GQ495M9 461 aa11.9□□□□□ -0.51
CCDC40-203ENST00000374877 BTNL9Q6UXG8 535 aa11.9□□□□□ -0.51
CCDC40-203ENST00000374877 HS2ST1Q7LGA3 356 aa11.9□□□□□ -0.51
CCDC40-203ENST00000374877 CDAN1Q8IWY9 1227 aa11.9□□□□□ -0.51
CCDC40-203ENST00000374877 BORCS6Q96GS4 357 aa11.9□□□□□ -0.51
CCDC40-203ENST00000374877 ZSWIM1Q9BR11 485 aa11.9□□□□□ -0.51
CCDC40-203ENST00000374877 DNAJC17Q9NVM6 304 aaKnown RBP11.9□□□□□ -0.51
CCDC40-203ENST00000374877 FRMD4BQ9Y2L6 1034 aa11.9□□□□□ -0.51
CCDC40-203ENST00000374877 CYP3A7-CYP3A51PA0A087WV96 503 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 FOXO6A8MYZ6 492 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 MIF4GDA9UHW6 222 aaKnown RBP11.89□□□□□ -0.51
CCDC40-203ENST00000374877 FAM86B1E9PN63 330 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 ATMINO43313 823 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-203ENST00000374877 SLC26A4O43511 780 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 MYCNP04198 464 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-203ENST00000374877 ASNSP08243 561 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 FAM86B2P0C5J1 330 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 COMTP21964 271 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 CYP3A7P24462 503 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 GBP1P32455 592 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 HIRAP54198 1017 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-203ENST00000374877 JAG1P78504 1218 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 CTTNQ14247 550 aaKnown RBP11.89□□□□□ -0.51
CCDC40-203ENST00000374877 P2RX7Q99572 595 aaKnown RBP11.89□□□□□ -0.51
CCDC40-203ENST00000374877 AGPAT1Q99943 283 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 SYT11Q9BT88 431 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 GLT8D2Q9H1C3 349 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.89□□□□□ -0.51
CCDC40-203ENST00000374877 PCYOX1Q9UHG3 505 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 PNMA3Q9UL41 463 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 PFASO15067 1338 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 CHMP2AO43633 222 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 ZNF76P36508 570 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 SLC8A3P57103 927 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 ZNF341Q9BYN7 854 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 GGA3Q9NZ52 723 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 MTUS1Q9ULD2 1270 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 PASKQ96RG2 1323 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 MEIS2O14770 477 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 SPOPO43791 374 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 KRT16P08779 473 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 PYGMP11217 842 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 TAL1P17542 331 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-203ENST00000374877 COPS2P61201 443 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 ADCY1Q08828 1119 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 SLFN13Q68D06 897 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 RINT1Q6NUQ1 792 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 TPH2Q8IWU9 490 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 SPICE1Q8N0Z3 855 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 CYP2W1Q8TAV3 490 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 RUNDC3BQ96NL0 473 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 POP1Q99575 1024 aaKnown RBP11.89□□□□□ -0.51
CCDC40-203ENST00000374877 EIF2AK1Q9BQI3 630 aaKnown RBP11.89□□□□□ -0.51
CCDC40-203ENST00000374877 CTNNAL1Q9UBT7 734 aa11.89□□□□□ -0.51
CCDC40-203ENST00000374877 ZMYM2Q9UBW7 1377 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 COILP38432 576 aaPredicted RBP11.88□□□□□ -0.51
CCDC40-203ENST00000374877 IKQ13123 557 aaPredicted RBP11.88□□□□□ -0.51
CCDC40-203ENST00000374877 SHROOM1Q2M3G4 852 aaPredicted RBP11.88□□□□□ -0.51
CCDC40-203ENST00000374877 PHLDB3Q6NSJ2 640 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 CPNE8Q86YQ8 564 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 TMEM109Q9BVC6 243 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 CDC42EP4Q9H3Q1 356 aaKnown RBP11.88□□□□□ -0.51
CCDC40-203ENST00000374877 UBE2TQ9NPD8 197 aaPredicted RBP11.88□□□□□ -0.51
CCDC40-203ENST00000374877 ZNF112Q9UJU3 913 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 TRIM33Q9UPN9 1127 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 TMX2Q9Y320 296 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 EML1O00423 815 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 CLGNO14967 610 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 EXOC3O60645 756 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 RTN2O75298 545 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 EYA4O95677 639 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 GAP43P17677 238 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 CTNNA2P26232 953 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 ZNF131P52739 623 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 USP50Q70EL3 339 aaPredicted RBP11.88□□□□□ -0.51
CCDC40-203ENST00000374877 MIGA2Q7L4E1 593 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 SPATA21Q7Z572 469 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 BTBD6Q96KE9 485 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 OLFML3Q9NRN5 406 aa11.88□□□□□ -0.51
CCDC40-203ENST00000374877 ZBTB39O15060 712 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 MSH4O15457 936 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 SNX1Q13596 522 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 RPUSD2Q8IZ73 545 aaKnown RBP11.87□□□□□ -0.51
CCDC40-203ENST00000374877 MAB21L3Q8N8X9 362 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 LENG9Q96B70 501 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 IFT74Q96LB3 600 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 MBOAT7Q96N66 472 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 FRMPD4Q14CM0 1322 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 CCDC189A1A4V9 331 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 GLTPD2A6NH11 291 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 F5H6K3 240 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 ECEL1O95672 775 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 GH1P01241 217 aa11.87□□□□□ -0.51
CCDC40-203ENST00000374877 HOXA13P31271 388 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms