RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 HS1BP3Q53T59 392 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 POMZP3Q6PJE2 187 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 MOXD1Q6UVY6 613 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 ZNF804AQ7Z570 1209 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 MYCT1Q8N699 235 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 ZBTB8BQ8NAP8 495 aaPredicted RBP4.3□□□□□ -1.72
MCF2-203ENST00000370576 ANKRD52Q8NB46 1076 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 OR52K2Q8NGK3 314 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 NCOA7Q8NI08 942 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 FATE1Q969F0 183 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 ANAPC16Q96DE5 110 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 C12orf42Q96LP6 360 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 FSD1Q9BTV5 496 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 UNC93B1Q9H1C4 597 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 ARHGEF4Q9NR80 690 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 CDKN2AIPQ9NXV6 580 aaPredicted RBP4.3□□□□□ -1.72
MCF2-203ENST00000370576 ANKIB1Q9P2G1 1089 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 CCDC85CA6NKD9 419 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 CASQ2O14958 399 aaPredicted RBP4.3□□□□□ -1.72
MCF2-203ENST00000370576 ZBTB14O43829 449 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 RPS12P25398 132 aaKnown RBP4.3□□□□□ -1.72
MCF2-203ENST00000370576 RFC4P35249 363 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 POLD2P49005 469 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 PCBP2Q15366 365 aaKnown RBP eCLIP4.3□□□□□ -1.72
MCF2-203ENST00000370576 WDR73Q6P4I2 378 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 ALKBH5Q6P6C2 394 aaKnown RBP4.3□□□□□ -1.72
MCF2-203ENST00000370576 KDELC1Q6UW63 502 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 BRAPQ7Z569 592 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 SLC51AQ86UW1 340 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 VSIG1Q86XK7 387 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 RFFLQ8WZ73 363 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 ERCC4Q92889 916 aaPredicted RBP4.3□□□□□ -1.72
MCF2-203ENST00000370576 PTP4A1Q93096 173 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 MPHOSPH8Q99549 860 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 TRIT1Q9H3H1 467 aaKnown RBP4.3□□□□□ -1.72
MCF2-203ENST00000370576 ZSWIM5Q9P217 1185 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 TUBE1Q9UJT0 475 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 TRAF3IP3Q9Y228 551 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 POLHQ9Y253 713 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 STXBP5LQ9Y2K9 1186 aa4.3□□□□□ -1.72
MCF2-203ENST00000370576 UBE2CO00762 179 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 TRIM16O95361 564 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 CALM1P0DP23 149 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 CALM2P0DP24 149 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 CALM3P0DP25 149 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 PLCG2P16885 1265 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 GPTP24298 496 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 SHMT1P34896 483 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 MAPK9P45984 424 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 ARHGAP8P85298 464 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 FOXO1Q12778 655 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 SEMA3AQ14563 771 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 SYNE3Q6ZMZ3 975 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 Q6ZUG5 572 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 TMTC3Q6ZXV5 915 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 CRACR2BQ8N4Y2 399 aaPredicted RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.29□□□□□ -1.72
MCF2-203ENST00000370576 FBXO18Q8NFZ0 1043 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 CNKSR1Q969H4 720 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 NCOR1P1Q9H4R4 102 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 LIN28AQ9H9Z2 209 aaKnown RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 GRID1Q9ULK0 1009 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 GIT1Q9Y2X7 761 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 NPFFR2Q9Y5X5 522 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 FNDC1Q4ZHG4 1894 aaPredicted RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 A0A1W2PQH9 124 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 STX6O43752 255 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 PLATP00750 562 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 PF4V1P10720 104 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 HARSP12081 509 aaKnown RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 YBX3P16989 372 aaKnown RBP eCLIP4.29□□□□□ -1.72
MCF2-203ENST00000370576 CASTP20810 708 aaKnown RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 MAPK4P31152 587 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 KRT20P35900 424 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 KIF23Q02241 960 aaPredicted RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 NR5A1Q13285 461 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 SPARCL1Q14515 664 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 RRP12Q5JTH9 1297 aaKnown RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 ATAT1Q5SQI0 421 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 BLOC1S2Q6QNY1 142 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 INTS8Q75QN2 995 aaKnown RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 HERC6Q8IVU3 1022 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 MAML2Q8IZL2 1156 aaPredicted RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 SLC7A5P1Q8MH63 180 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 PPM1KQ8N3J5 372 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 SGCDQ92629 289 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 CCDC74AQ96AQ1 378 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 GIMAP5Q96F15 307 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 BHMT2Q9H2M3 363 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 RNF41Q9H4P4 317 aaPredicted RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 SENP2Q9HC62 589 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 XAB2Q9HCS7 855 aaKnown RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 PDE7BQ9NP56 450 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 PRDM6Q9NQX0 595 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 C6orf203Q9P0P8 240 aaPredicted RBP4.29□□□□□ -1.72
MCF2-203ENST00000370576 CFAP45Q9UL16 551 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 ATP8B3O60423 1300 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 LTBP2Q14767 1821 aa4.29□□□□□ -1.72
MCF2-203ENST00000370576 ATP2A1O14983 1001 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms