RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 PAPOLAP51003 745 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 SKP1P63208 163 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 PDE1BQ01064 536 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 TRMT2AQ8IZ69 625 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 SRBD1Q8N5C6 995 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 C8orf58Q8NAV2 365 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 OR6B3Q8NGW1 331 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 FAM81AQ8TBF8 368 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 LRRC2Q9BYS8 371 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 TMEM206Q9H813 350 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 C10orf88Q9H8K7 445 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 CTNND2Q9UQB3 1225 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 HYOU1Q9Y4L1 999 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 COPG1Q9Y678 874 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 TNS3Q68CZ2 1445 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 C1orf167Q5SNV9 1468 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 HSPA8P11142 646 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 EIF2AK2P19525 551 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 TFAMQ00059 246 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 TNNI3KQ59H18 835 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 ZNF438Q7Z4V0 828 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 CMTR1Q8N1G2 835 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 KIFC3Q9BVG8 833 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 SLC25A13Q9UJS0 675 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 MAGED2Q9UNF1 606 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 SIGLEC1Q9BZZ2 1709 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 GOLGA8MH3BSY2 632 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 CTNND1O60716 968 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 TCP1P17987 556 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 MARK3P27448 753 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 SOX11P35716 441 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 PIK3CAP42336 1068 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 PUDPQ08623 228 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 SUZ12Q15022 739 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 PUS10Q3MIT2 529 aaKnown RBP9.14□□□□□ -0.95
SYNE1-206ENST00000367253 TMTC3Q6ZXV5 915 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 ANKRD23Q86SG2 305 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 DCLK2Q8N568 766 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 KRT12Q99456 494 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 MAGEB5Q9BZ81 275 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 GGT7Q9UJ14 662 aa9.14□□□□□ -0.95
SYNE1-206ENST00000367253 SYNRGQ9UMZ2 1314 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 ARHGEF28Q8N1W1 1705 aaKnown RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 TMEM191CA6NGB0 347 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 MYMKA6NI61 221 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 GPC4O75487 556 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 RALBP11234 206 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 ARHGEF7Q14155 803 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 C7orf61Q8IZ16 206 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 GALNT6Q8NCL4 622 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 OSBPL1AQ9BXW6 950 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 DCCP43146 1447 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 ZNF532Q9HCE3 1301 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 SH3D21A4FU49 640 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 IRF6O14896 467 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 TLL1O43897 1013 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 CTSHP09668 335 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 MYCLP1P12525 358 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 IL1RL1Q01638 556 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 NFIXQ14938 502 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 LONRF2Q1L5Z9 754 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 C8orf34Q49A92 452 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 C10orf62Q5T681 223 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 KRT40Q6A162 431 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 CCDC149Q6ZUS6 474 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 PLEKHM2Q8IWE5 1019 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 PARP9Q8IXQ6 854 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 CSGALNACT2Q8N6G5 542 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 HPS3Q969F9 1004 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 IFIH1Q9BYX4 1025 aaKnown RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 DEFB129Q9H1M3 183 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 KIAA1586Q9HCI6 787 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 HDAC6Q9UBN7 1215 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 DDX25Q9UHL0 483 aaKnown RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 NDUFB9Q9Y6M9 179 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 ARHGAP10A1A4S6 786 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 CFAP99D6REC4 459 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 TIPRLO75663 272 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 CASP6P55212 293 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 RPL10AP62906 217 aaKnown RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 SCRN3Q0VDG4 424 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 CYLC2Q14093 348 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 MAPRE1Q15691 268 aaKnown RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 BEND3Q5T5X7 828 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 PSRC1Q6PGN9 363 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 CCDC84Q86UT8 332 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 MRPL50Q8N5N7 158 aaKnown RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 PIGBQ92521 554 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 HSPH1Q92598 858 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 B3GALT6Q96L58 329 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 ACCSQ96QU6 501 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 MTG1Q9BT17 334 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 TYW1Q9NV66 732 aaKnown RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 ZNF148Q9UQR1 794 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 SNX5Q9Y5X3 404 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 ASAP2O43150 1006 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 CTNNB1P35222 781 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 OR1G1P47890 313 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 TRAPPC10P48553 1259 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 MTX1Q13505 466 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms