RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 INF2Q27J81 1249 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 XKR9Q5GH70 373 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 PPP4R3AQ6IN85 833 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 POTEGQ6S5H5 508 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 PARM1Q6UWI2 310 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 GLYCTKQ8IVS8 523 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 FGF14Q92915 247 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 CPB2Q96IY4 423 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 NAP1L4Q99733 375 aaKnown RBP15.4■□□□□ 0.06
VPS29-201ENST00000360579 APOL6Q9BWW8 343 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 ZSWIM4Q9H7M6 989 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 NCOA5Q9HCD5 579 aaKnown RBP15.4■□□□□ 0.06
VPS29-201ENST00000360579 BMP2KQ9NSY1 1161 aaPredicted RBP15.4■□□□□ 0.06
VPS29-201ENST00000360579 WRAP73Q9P2S5 460 aaPredicted RBP15.4■□□□□ 0.06
VPS29-201ENST00000360579 SNX14Q9Y5W7 946 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 DOCK8Q8NF50 2099 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 GPR179Q6PRD1 2367 aa15.39■□□□□ 0.05
VPS29-201ENST00000360579 CPLX1O14810 134 aa15.39■□□□□ 0.05
VPS29-201ENST00000360579 MARCH6O60337 910 aa15.39■□□□□ 0.05
VPS29-201ENST00000360579 RPL17P18621 184 aaKnown RBP15.39■□□□□ 0.05
VPS29-201ENST00000360579 HSPA4P34932 840 aa15.39■□□□□ 0.05
VPS29-201ENST00000360579 HSP90AA2PQ14568 343 aaPredicted RBP15.39■□□□□ 0.05
VPS29-201ENST00000360579 SLC44A4Q53GD3 710 aa15.39■□□□□ 0.05
VPS29-201ENST00000360579 PPM1LQ5SGD2 360 aa15.39■□□□□ 0.05
VPS29-201ENST00000360579 PDXDC1Q6P996 788 aa15.39■□□□□ 0.05
VPS29-201ENST00000360579 CPLX2Q6PUV4 134 aaKnown RBP15.39■□□□□ 0.05
VPS29-201ENST00000360579 GRASPQ7Z6J2 395 aaPredicted RBP15.39■□□□□ 0.05
VPS29-201ENST00000360579 NFKBIZQ9BYH8 718 aa15.39■□□□□ 0.05
VPS29-201ENST00000360579 NXF3Q9H4D5 531 aaKnown RBP15.39■□□□□ 0.05
VPS29-201ENST00000360579 CACNA1BQ00975 2339 aa15.39■□□□□ 0.05
VPS29-201ENST00000360579 FANCMQ8IYD8 2048 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 CCDC194A0A1B0GVG4 234 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 FAM170BA6NMN3 283 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 PRR5-ARHGAP8B1AHC4 643 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 NCAM2O15394 837 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 POU2F2P09086 479 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 ARF4P18085 180 aaPredicted RBP15.38■□□□□ 0.05
VPS29-201ENST00000360579 ARHGAP8P85298 464 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 MBTD1Q05BQ5 628 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 UBXN2BQ14CS0 331 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 SLC27A1Q6PCB7 646 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 NEK8Q86SG6 692 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 GSTCDQ8NEC7 633 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 PIK3R5Q8WYR1 880 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 FGF13Q92913 245 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 NELL2Q99435 816 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 TTPALQ9BTX7 342 aa15.38■□□□□ 0.05
VPS29-201ENST00000360579 RPP25Q9BUL9 199 aaKnown RBP15.38■□□□□ 0.05
VPS29-201ENST00000360579 LRRN2O75325 713 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 DGAT1O75907 488 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 C8AP07357 584 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 AKAP5P24588 427 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 IRX6P78412 446 aaPredicted RBP15.37■□□□□ 0.05
VPS29-201ENST00000360579 LMNB2Q03252 620 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 CSTF1Q05048 431 aaKnown RBP15.37■□□□□ 0.05
VPS29-201ENST00000360579 ELAVL2Q12926 359 aaKnown RBP15.37■□□□□ 0.05
VPS29-201ENST00000360579 TUSC3Q13454 348 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 NPY5RQ15761 445 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 AMHR2Q16671 573 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 RTP2Q5QGT7 225 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 ZBTB41Q5SVQ8 909 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 PRSS55Q6UWB4 352 aaPredicted RBP15.37■□□□□ 0.05
VPS29-201ENST00000360579 RTL10Q7L3V2 364 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 SLFN12Q8IYM2 578 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 ST13P5Q8NFI4 369 aaPredicted RBP15.37■□□□□ 0.05
VPS29-201ENST00000360579 PHF20Q9BVI0 1012 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 LTB4R2Q9NPC1 389 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 XPNPEP1Q9NQW7 623 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 ZSCAN32Q9NX65 697 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 RGL1Q9NZL6 768 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 PARP2Q9UGN5 583 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 KCNH3Q9ULD8 1083 aa15.37■□□□□ 0.05
VPS29-201ENST00000360579 CACNA1IQ9P0X4 2223 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 A0A1B0GUA9 196 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 CCNT1O60563 726 aaKnown RBP15.36■□□□□ 0.05
VPS29-201ENST00000360579 BAG4O95429 457 aaKnown RBP15.36■□□□□ 0.05
VPS29-201ENST00000360579 NPTXRO95502 500 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 CAPSQ13938 189 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 PSMD5Q16401 504 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 UVSSAQ2YD98 709 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 FAM171A1Q5VUB5 890 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 NCAPH2Q6IBW4 605 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 ZBTB44Q8NCP5 570 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 DYDC2Q96IM9 177 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 CCDC43Q96MW1 224 aaKnown RBP15.36■□□□□ 0.05
VPS29-201ENST00000360579 CNTNAP3BQ96NU0 1288 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 CLSTN3Q9BQT9 956 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 FAM126AQ9BYI3 521 aaPredicted RBP15.36■□□□□ 0.05
VPS29-201ENST00000360579 CNTNAP3Q9BZ76 1288 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 EPC1Q9H2F5 836 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 CDV3Q9UKY7 258 aaKnown RBP15.36■□□□□ 0.05
VPS29-201ENST00000360579 POLIQ9UNA4 740 aa15.36■□□□□ 0.05
VPS29-201ENST00000360579 SMG5Q9UPR3 1016 aaKnown RBP15.36■□□□□ 0.05
VPS29-201ENST00000360579 MRPS17Q9Y2R5 130 aaKnown RBP15.36■□□□□ 0.05
VPS29-201ENST00000360579 MTCL1Q9Y4B5 1905 aaKnown RBP15.36■□□□□ 0.05
VPS29-201ENST00000360579 TPRP12270 2363 aaKnown RBP15.36■□□□□ 0.05
VPS29-201ENST00000360579 CCL16O15467 120 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 TBC1D4O60343 1298 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 XBP1P17861 261 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 ARL2P36404 184 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms