RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 C9orf72Q96LT7 481 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 ZNF317Q96PQ6 595 aaPredicted RBP13□□□□□ -0.33
CLIP3-201ENST00000360535 EHMT1Q9H9B1 1298 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 ATAD5Q96QE3 1844 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 TMEM120BA0PK00 339 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 FMO1Q01740 532 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 KAZNQ674X7 775 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 CC2D2BQ6DHV5 1058 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 EXOC3L1Q86VI1 746 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 FAM228AQ86W67 206 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 COL23A1Q86Y22 540 aaPredicted RBP13□□□□□ -0.33
CLIP3-201ENST00000360535 TAB3Q8N5C8 712 aaPredicted RBP13□□□□□ -0.33
CLIP3-201ENST00000360535 N4BP2L2Q92802 583 aaPredicted RBP13□□□□□ -0.33
CLIP3-201ENST00000360535 BICD1Q96G01 975 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 CXorf56Q9H5V9 222 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 COL20A1Q9P218 1284 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 PFASO15067 1338 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 TESPA1A2RU30 521 aaPredicted RBP12.99□□□□□ -0.33
CLIP3-201ENST00000360535 THAP12O43422 761 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 GJB6O95452 261 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 NUDT17P0C025 328 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 CYP11B1P15538 503 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 ZNF131P52739 623 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 SLC15A2Q16348 729 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 SNRNP35Q16560 246 aaKnown RBP12.99□□□□□ -0.33
CLIP3-201ENST00000360535 UGCGQ16739 394 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 C1orf220Q5T0J3 134 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 CHURC1Q8WUH1 139 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 MASTLQ96GX5 879 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 TMEM39BQ9GZU3 492 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 L3MBTL1Q9Y468 752 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 UBOX5O94941 541 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 RARRES1P49788 294 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 MMP14P50281 582 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 FAM47EQ6ZV65 393 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 SRRM1Q8IYB3 904 aaKnown RBP12.99□□□□□ -0.33
CLIP3-201ENST00000360535 POMGNT1Q8WZA1 660 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 MXRA8Q9BRK3 442 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 WNT8AQ9H1J5 351 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 TMEM206Q9H813 350 aa12.99□□□□□ -0.33
CLIP3-201ENST00000360535 C5orf60A6NFR6 353 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 PIK3CDO00329 1044 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 O00370 1275 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 AGTP01019 485 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 VIL1P09327 827 aaKnown RBP12.98□□□□□ -0.33
CLIP3-201ENST00000360535 PAEPP09466 180 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 YWHABP31946 246 aaKnown RBP12.98□□□□□ -0.33
CLIP3-201ENST00000360535 PDE6BP35913 854 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 MFAP3P55082 362 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 DRP2Q13474 957 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 MTM1Q13496 603 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 TAOK1Q7L7X3 1001 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 GSTA5Q7RTV2 222 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 TRPM8Q7Z2W7 1104 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 PGM2Q96G03 612 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 TACO1Q9BSH4 297 aaKnown RBP12.98□□□□□ -0.33
CLIP3-201ENST00000360535 RAVER2Q9HCJ3 691 aaKnown RBP12.98□□□□□ -0.33
CLIP3-201ENST00000360535 PARP2Q9UGN5 583 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 FOCADQ5VW36 1801 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 PPIP5K2O43314 1243 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 P4HBP07237 508 aaKnown RBP12.98□□□□□ -0.33
CLIP3-201ENST00000360535 EZRP15311 586 aaKnown RBP12.98□□□□□ -0.33
CLIP3-201ENST00000360535 CTNNA2P26232 953 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 ITGA8P53708 1063 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 SLMAPQ14BN4 828 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 CNGA2Q16280 664 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 C11orf63Q6NUN7 778 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 TRIM33Q9UPN9 1127 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 TAF1LQ8IZX4 1826 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 RARGP13631 454 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 PLS3P13797 630 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 KCNJ2P63252 427 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 ARMC9Q7Z3E5 817 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 NT5C1BQ96P26 610 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 HERPUD2Q9BSE4 406 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.98□□□□□ -0.33
CLIP3-201ENST00000360535 PCYOX1Q9UHG3 505 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 GGA2Q9UJY4 613 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 NOCTQ9UK39 431 aaKnown RBP12.98□□□□□ -0.33
CLIP3-201ENST00000360535 AGAP1Q9UPQ3 857 aa12.98□□□□□ -0.33
CLIP3-201ENST00000360535 R3HDM2Q9Y2K5 976 aaKnown RBP12.98□□□□□ -0.33
CLIP3-201ENST00000360535 DENND3A2RUS2 1198 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 EIF4E1BA6NMX2 242 aaKnown RBP12.97□□□□□ -0.33
CLIP3-201ENST00000360535 BRAFP15056 766 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 SCP2P22307 547 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 GBP2P32456 591 aaPredicted RBP12.97□□□□□ -0.33
CLIP3-201ENST00000360535 QARSP47897 775 aaKnown RBP12.97□□□□□ -0.33
CLIP3-201ENST00000360535 ELF3P78545 371 aaPredicted RBP12.97□□□□□ -0.33
CLIP3-201ENST00000360535 SPP2Q13103 211 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 BTNL9Q6UXG8 535 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 PRCCQ92733 491 aaPredicted RBP12.97□□□□□ -0.33
CLIP3-201ENST00000360535 NSRP1Q9H0G5 558 aaKnown RBP12.97□□□□□ -0.33
CLIP3-201ENST00000360535 HOMER3Q9NSC5 361 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 PI4K2BG5E9Z4 385 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 ATP9AO75110 1047 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 SPAG7O75391 227 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 HARSP12081 509 aaKnown RBP12.97□□□□□ -0.33
CLIP3-201ENST00000360535 CD58P19256 250 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 RRM1P23921 792 aa12.97□□□□□ -0.33
CLIP3-201ENST00000360535 STX2P32856 288 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms