RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 TULP1O00294 542 aaPredicted RBP20.2■□□□□ 0.82
CLN3-206ENST00000360019 HSPA8P11142 646 aaKnown RBP20.2■□□□□ 0.82
CLN3-206ENST00000360019 CCL5P13501 91 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 MXI1P50539 228 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 CLDN10P78369 228 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 MRPS6P82932 125 aaKnown RBP20.2■□□□□ 0.82
CLN3-206ENST00000360019 HSP90AA2PQ14568 343 aaPredicted RBP20.2■□□□□ 0.82
CLN3-206ENST00000360019 CATSPER4Q7RTX7 472 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 USP37Q86T82 979 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 RPAINQ86UA6 219 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 BRSK2Q8IWQ3 736 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 CCDC51Q96ER9 411 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 FAM84AQ96KN4 292 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 DEFB118Q96PH6 123 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 DNAJC7Q99615 494 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 CELF4Q9BZC1 486 aaKnown RBP20.2■□□□□ 0.82
CLN3-206ENST00000360019 SIX2Q9NPC8 291 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 PLCB1Q9NQ66 1216 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 PHF24Q9UPV7 400 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 P4HA2O15460 535 aa20.19■□□□□ 0.82
CLN3-206ENST00000360019 MCF2P10911 925 aa20.19■□□□□ 0.82
CLN3-206ENST00000360019 PTPN11Q06124 597 aaPredicted RBP20.19■□□□□ 0.82
CLN3-206ENST00000360019 PCBP1Q15365 356 aaKnown RBP eCLIP20.19■□□□□ 0.82
CLN3-206ENST00000360019 TRIM65Q6PJ69 517 aa20.19■□□□□ 0.82
CLN3-206ENST00000360019 THNSL1Q8IYQ7 743 aa20.19■□□□□ 0.82
CLN3-206ENST00000360019 BAP1Q92560 729 aa20.19■□□□□ 0.82
CLN3-206ENST00000360019 STARD7Q9NQZ5 370 aa20.19■□□□□ 0.82
CLN3-206ENST00000360019 CDY2AQ9Y6F7 541 aa20.19■□□□□ 0.82
CLN3-206ENST00000360019 PTPRJQ12913 1337 aa20.19■□□□□ 0.82
CLN3-206ENST00000360019 KBTBD13C9JR72 458 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 PMM2O15305 246 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 N4BP1O75113 896 aaKnown RBP20.18■□□□□ 0.82
CLN3-206ENST00000360019 OSTNP61366 133 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 ZBED6P86452 979 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 KLHDC7AQ5VTJ3 777 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 LMBRD2Q68DH5 695 aaPredicted RBP20.18■□□□□ 0.82
CLN3-206ENST00000360019 RSPH3Q86UC2 560 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 TMEM192Q8IY95 271 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 SLC43A3Q8NBI5 491 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 CCDC112Q8NEF3 446 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 LMO3Q8TAP4 145 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 ZNF516Q92618 1163 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 FNBP1Q96RU3 617 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 BAG1Q99933 345 aaPredicted RBP20.18■□□□□ 0.82
CLN3-206ENST00000360019 RNF208Q9H0X6 261 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 TMEM8AQ9HCN3 771 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 CEP72Q9P209 647 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 MKI67P46013 3256 aaKnown RBP20.18■□□□□ 0.82
CLN3-206ENST00000360019 ESPNB1AK53 854 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 DNM1LO00429 736 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 STX10O60499 249 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 CTSHP09668 335 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 FECHP22830 423 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 GTF2H1P32780 548 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 POLR2FP61218 127 aaKnown RBP20.18■□□□□ 0.82
CLN3-206ENST00000360019 EPC2Q52LR7 807 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 KRT39Q6A163 491 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 CTU1Q7Z7A3 348 aaKnown RBP20.18■□□□□ 0.82
CLN3-206ENST00000360019 OR8K1Q8NGG5 319 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 DHX38Q92620 1227 aaKnown RBP20.18■□□□□ 0.82
CLN3-206ENST00000360019 EDEM3Q9BZQ6 932 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 INTS2Q9H0H0 1204 aaKnown RBP20.18■□□□□ 0.82
CLN3-206ENST00000360019 TRPV2Q9Y5S1 764 aa20.18■□□□□ 0.82
CLN3-206ENST00000360019 LRRN2O75325 713 aa20.17■□□□□ 0.82
CLN3-206ENST00000360019 CHRNA1P02708 482 aa20.17■□□□□ 0.82
CLN3-206ENST00000360019 UCHL3P15374 230 aa20.17■□□□□ 0.82
CLN3-206ENST00000360019 MGAT3Q09327 533 aa20.17■□□□□ 0.82
CLN3-206ENST00000360019 ENOX2Q16206 610 aaKnown RBP20.17■□□□□ 0.82
CLN3-206ENST00000360019 C15orf39Q6ZRI6 1047 aa20.17■□□□□ 0.82
CLN3-206ENST00000360019 SV2AQ7L0J3 742 aa20.17■□□□□ 0.82
CLN3-206ENST00000360019 SENP6Q9GZR1 1112 aaPredicted RBP20.17■□□□□ 0.82
CLN3-206ENST00000360019 NLRC4Q9NPP4 1024 aa20.17■□□□□ 0.82
CLN3-206ENST00000360019 OGDHLQ9ULD0 1010 aa20.17■□□□□ 0.82
CLN3-206ENST00000360019 A0A0U1RQG5 324 aaPredicted RBP20.16■□□□□ 0.82
CLN3-206ENST00000360019 M0QZ92 97 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 PTK7Q13308 1070 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 GJB7Q6PEY0 223 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 CACNA2D4Q7Z3S7 1137 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 FAM228AQ86W67 206 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 EHBP1Q8NDI1 1231 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 ZNF397Q8NF99 534 aaPredicted RBP20.16■□□□□ 0.82
CLN3-206ENST00000360019 KIAA1524Q8TCG1 905 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 CGRRF1Q99675 332 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 AJAP1Q9UKB5 411 aaPredicted RBP20.16■□□□□ 0.82
CLN3-206ENST00000360019 COQ4Q9Y3A0 265 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 FHOD1Q9Y613 1164 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 MEFVO15553 781 aaPredicted RBP20.16■□□□□ 0.82
CLN3-206ENST00000360019 RPLP2P05387 115 aaKnown RBP20.16■□□□□ 0.82
CLN3-206ENST00000360019 STAG3L1P0CL83 205 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 TNNI1P19237 187 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 THPOP40225 353 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 NCBP1Q09161 790 aaKnown RBP20.16■□□□□ 0.82
CLN3-206ENST00000360019 CETN1Q12798 172 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 TRIM71Q2Q1W2 868 aaKnown RBP20.16■□□□□ 0.82
CLN3-206ENST00000360019 E4F1Q66K89 784 aaPredicted RBP20.16■□□□□ 0.82
CLN3-206ENST00000360019 NOTUMQ6P988 496 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 WDR59Q6PJI9 974 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 TAS1R2Q8TE23 839 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 SEMA4DQ92854 862 aa20.16■□□□□ 0.82
CLN3-206ENST00000360019 ADPGKQ9BRR6 497 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms