RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 SFI1A8K8P3 1242 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 H0Y626 953 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 DFFAO00273 331 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 TNPO2O14787 897 aaKnown RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 RTN2O75298 545 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 TRIM16O95361 564 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 HMOX2P30519 316 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 TPI1P60174 286 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 DRAP1Q14919 205 aaPredicted RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 LRRC8EQ6NSJ5 796 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 SWSAP1Q6NVH7 229 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 C4orf22Q6V702 233 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 HOMEZQ8IX15 550 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 CEP70Q8NHQ1 597 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 KIF12Q96FN5 646 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 MED15Q96RN5 788 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 LXNQ9BS40 222 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 SPATA16Q9BXB7 569 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 CCDC90BQ9GZT6 254 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 KCND2Q9NZV8 630 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 AGO2Q9UKV8 859 aaKnown RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 SMG5Q9UPR3 1016 aaKnown RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 MMP10P09238 476 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 KITP10721 976 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 MAGEA9P43362 315 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 ARL4DP49703 201 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 SULT1E1P49888 294 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 GFPT1Q06210 699 aaPredicted RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 AARS2Q5JTZ9 985 aaKnown RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 BEND6Q5SZJ8 279 aaPredicted RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 HIPK4Q8NE63 616 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 CMTM5Q96DZ9 223 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 OSBPL9Q96SU4 736 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 PKD2L2Q9NZM6 624 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 CLCA2Q9UQC9 943 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 CCDC195A0A1B0GUA6 201 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 POTEMA6NI47 508 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 C3orf70A6NLC5 250 aaPredicted RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 MCAMP43121 646 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 SNAP25P60880 206 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 SNRPFP62306 86 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 PRKCQQ04759 706 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 MRPL28Q13084 256 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 NBPF20Q3BBV1 942 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 TRMT2AQ8IZ69 625 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 ENAHQ8N8S7 591 aaPredicted RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 RNF25Q96BH1 459 aaPredicted RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 PSD3Q9NYI0 1048 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 AFF4Q9UHB7 1163 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 PCDHA10Q9Y5I2 948 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 COL15A1P39059 1388 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 DISP1Q96F81 1524 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 NEDD4P46934 1319 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 CYP2D7A0A087X1C5 515 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 PDXKO00764 312 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ZSCAN9O15535 394 aaPredicted RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 EYA4O95677 639 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 FTLP02792 175 aaPredicted RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 RALBP11234 206 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 BRAFP15056 766 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 HSPA9P38646 679 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 VCPP55072 806 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 MAGOHP61326 146 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 SKOR1P84550 965 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 PDAP1Q13442 181 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 LLGL1Q15334 1064 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 IZUMO3Q5VZ72 239 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 CCDC137Q6PK04 289 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 KCTD17Q8N5Z5 321 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 STKLD1Q8NE28 680 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 APPL2Q8NEU8 664 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 OR6P1Q8NGX9 317 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 CALML6Q8TD86 181 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 STAMBPL1Q96FJ0 436 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 SLC38A7Q9NVC3 462 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 CEP170Q5SW79 1584 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ZC3H4Q9UPT8 1303 aaKnown RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 DEAF1O75398 565 aaPredicted RBP6.82□□□□□ -1.32
UPF2-201ENST00000356352 SPAG6O75602 509 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 KCNJ6P48051 423 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 PCYT1AP49585 367 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 GPSM2P81274 684 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 PDCLQ13371 301 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 SEPT12Q8IYM1 358 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 PIGBQ92521 554 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 CEP95Q96GE4 821 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 SPATA17Q96L03 361 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ATP6V1G3Q96LB4 118 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 FAM161BQ96MY7 647 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 SPON2Q9BUD6 331 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 FOXP3Q9BZS1 431 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ECT2Q9H8V3 914 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 ZNF556Q9HAH1 456 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 GIMAP4Q9NUV9 329 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 BLOC1S6Q9UL45 172 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 C21orf2O43822 256 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 FAM107AO95990 144 aa6.82□□□□□ -1.32
UPF2-201ENST00000356352 GRIK1P39086 918 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms