RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.98■□□□□ 0.15
PRPF40A-201ENST00000354363 SNTG2Q9NY99 539 aa15.98■□□□□ 0.15
PRPF40A-201ENST00000354363 FNIP2Q9P278 1114 aa15.98■□□□□ 0.15
PRPF40A-201ENST00000354363 CITO14578 2027 aa15.98■□□□□ 0.15
PRPF40A-201ENST00000354363 CLUHO75153 1309 aa15.98■□□□□ 0.15
PRPF40A-201ENST00000354363 ARHGEF35A5YM69 484 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 H0Y858 1186 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 TGM5O43548 720 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 EDN1P05305 212 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 PRKCBP05771 671 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 TUSC3Q13454 348 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 PRPF4BQ13523 1007 aaKnown RBP15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 HSP90AA2PQ14568 343 aaPredicted RBP15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 MAPK6Q16659 721 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 TTC38Q5R3I4 469 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 GLYCTKQ8IVS8 523 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 SMG7Q92540 1137 aaKnown RBP15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 ATOH1Q92858 354 aaPredicted RBP15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 CCDC113Q9H0I3 377 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 MFSD1Q9H3U5 465 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 PLEKHA4Q9H4M7 779 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 DUSP12Q9UNI6 340 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 USP20Q9Y2K6 914 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 CASTOR2A6NHX0 329 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 PTGESO14684 152 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 TADA2AO75478 443 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 RPL17P18621 184 aaKnown RBP15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 MUTP22033 750 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 NAMPTP43490 491 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 TMEM132AQ24JP5 1023 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 LILRA6Q6PI73 481 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 FBXO18Q8NFZ0 1043 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 STAMQ92783 540 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 NT5C3AQ9H0P0 336 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 CXCL16Q9H2A7 254 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 IGSF9Q9P2J2 1179 aa15.97■□□□□ 0.15
PRPF40A-201ENST00000354363 SF3B1O75533 1304 aaKnown RBP eCLIP15.96■□□□□ 0.154e-7■■■■■ 86.2
PRPF40A-201ENST00000354363 MYH15Q9Y2K3 1946 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 ACKR2O00590 384 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 RECQL4O94761 1208 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 GBP2P32456 591 aaPredicted RBP15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 CLCN5P51795 746 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 HMGN5P82970 282 aaKnown RBP15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 CREMQ03060 361 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 ECM1Q16610 540 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 RTP2Q5QGT7 225 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 EEF1DP3Q658K8 133 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 HAUS3Q68CZ6 603 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 CWF19L1Q69YN2 538 aaKnown RBP15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 PRSS55Q6UWB4 352 aaPredicted RBP15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 NOSTRINQ8IVI9 506 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 C4orf32Q8N8J7 132 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 DEPTORQ8TB45 409 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 HASPINQ8TF76 798 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 MYADMQ96S97 322 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 ADPGKQ9BRR6 497 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 ZDHHC7Q9NXF8 308 aa15.96■□□□□ 0.15
PRPF40A-201ENST00000354363 NOTCH4Q99466 2003 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 KIF4AO95239 1232 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 THP07101 528 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 LIG1P18858 919 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 CCT6AP40227 531 aaKnown RBP15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 TRAPPC10P48553 1259 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 RBM25P49756 843 aaKnown RBP15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 FXR2P51116 673 aaKnown RBP eCLIP15.95■□□□□ 0.145e-9■■■□□ 17
PRPF40A-201ENST00000354363 NBR1Q14596 966 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 PPP2R5AQ15172 486 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 NAB2Q15742 525 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 RSAD2Q8WXG1 361 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 ZSCAN31Q96LW9 406 aaPredicted RBP15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 KIFC3Q9BVG8 833 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 POLD4Q9HCU8 107 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 EPS15L1Q9UBC2 864 aa15.95■□□□□ 0.14
PRPF40A-201ENST00000354363 NARSO43776 548 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 NPR3P17342 541 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 GNL2Q13823 731 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 FLCNQ8NFG4 579 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 TTPALQ9BTX7 342 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 PRKD2Q9BZL6 878 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 BHMT2Q9H2M3 363 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 PIDD1Q9HB75 910 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 NOL7Q9UMY1 257 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 PDCD11Q14690 1871 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 GFRA3O60609 400 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 DCAF4L1Q3SXM0 396 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 NT5DC1Q5TFE4 455 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 FAM171A1Q5VUB5 890 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 FAM184AQ8NB25 1140 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 PIK3R5Q8WYR1 880 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 IFT74Q96LB3 600 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 SH2B1Q9NRF2 756 aaPredicted RBP15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 LRWD1Q9UFC0 647 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 FBXW11Q9UKB1 542 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 FBXL21Q9UKT6 434 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 GDAQ9Y2T3 454 aa15.94■□□□□ 0.14
PRPF40A-201ENST00000354363 MYO15AQ9UKN7 3530 aa15.93■□□□□ 0.14
PRPF40A-201ENST00000354363 PI15O43692 258 aa15.93■□□□□ 0.14
PRPF40A-201ENST00000354363 ST18O60284 1047 aa15.93■□□□□ 0.14
PRPF40A-201ENST00000354363 ZMYND10O75800 440 aa15.93■□□□□ 0.14
PRPF40A-201ENST00000354363 AOC1P19801 751 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms