RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 TBKBP1A7MCY6 615 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 PPP1R3GB7ZBB8 358 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 MLH1P40692 756 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 LRIT3Q3SXY7 679 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 HS2ST1Q7LGA3 356 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 CCDC94Q9BW85 323 aaPredicted RBP24.18■■□□□ 1.46
SHMT1-203ENST00000354098 GTPBP4Q9BZE4 634 aaKnown RBP24.18■■□□□ 1.46
SHMT1-203ENST00000354098 MIOSQ9NXC5 875 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 GIT1Q9Y2X7 761 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 GOLGA8IPA6NC78 632 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 ARL5CA6NH57 179 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 GOLGA8JA6NMD2 632 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 PDXKO00764 312 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 HOXA2O43364 376 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 GLB1LQ6UWU2 654 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 CRELD2Q6UXH1 353 aaPredicted RBP24.17■■□□□ 1.46
SHMT1-203ENST00000354098 ABI1Q8IZP0 508 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 GSTCDQ8NEC7 633 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 ACAP3Q96P50 834 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 TMEM117Q9H0C3 514 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 UBN1Q9NPG3 1134 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 HSPBP1Q9NZL4 362 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 HCSTQ9UBK5 93 aa24.17■■□□□ 1.46
SHMT1-203ENST00000354098 SNRPFP62306 86 aaKnown RBP24.16■■□□□ 1.46
SHMT1-203ENST00000354098 FAM213AQ9BRX8 229 aa24.16■■□□□ 1.46
SHMT1-203ENST00000354098 CPSF3Q9UKF6 684 aaKnown RBP24.16■■□□□ 1.46
SHMT1-203ENST00000354098 TRAF3IP3Q9Y228 551 aa24.16■■□□□ 1.46
SHMT1-203ENST00000354098 PCDHA11Q9Y5I1 949 aa24.16■■□□□ 1.46
SHMT1-203ENST00000354098 TRIOBPQ9H2D6 2365 aa24.16■■□□□ 1.46
SHMT1-203ENST00000354098 ARHGEF15O94989 841 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 CYP2J2P51589 502 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 PMS1P54277 932 aaKnown RBP24.15■■□□□ 1.46
SHMT1-203ENST00000354098 BTG3Q14201 252 aaPredicted RBP24.15■■□□□ 1.46
SHMT1-203ENST00000354098 SLC10A6Q3KNW5 377 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 ZCWPW2Q504Y3 356 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 NOMO2Q5JPE7 1267 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 KLHL10Q6JEL2 608 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 LRRC55Q6ZSA7 311 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 NOC3LQ8WTT2 800 aaKnown RBP24.15■■□□□ 1.46
SHMT1-203ENST00000354098 GBF1Q92538 1859 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 POMCP01189 267 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 CA3P07451 260 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 CLTAP09496 248 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 CXCL8P10145 99 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 SCNN1GP51170 649 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 SMAD3P84022 425 aaKnown RBP24.15■■□□□ 1.46
SHMT1-203ENST00000354098 ENOX2Q16206 610 aaKnown RBP24.15■■□□□ 1.46
SHMT1-203ENST00000354098 CENPPQ6IPU0 288 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 SP7Q8TDD2 431 aaPredicted RBP24.15■■□□□ 1.46
SHMT1-203ENST00000354098 CGNQ9P2M7 1197 aaKnown RBP24.15■■□□□ 1.46
SHMT1-203ENST00000354098 PLAGL2Q9UPG8 496 aa24.15■■□□□ 1.46
SHMT1-203ENST00000354098 TRIM49BA6NDI0 452 aa24.14■■□□□ 1.45
SHMT1-203ENST00000354098 SOX1O00570 391 aaPredicted RBP24.14■■□□□ 1.45
SHMT1-203ENST00000354098 YARSP54577 528 aaKnown RBP24.14■■□□□ 1.45
SHMT1-203ENST00000354098 STIM1Q13586 685 aa24.14■■□□□ 1.45
SHMT1-203ENST00000354098 SKOR2Q2VWA4 1001 aaPredicted RBP24.14■■□□□ 1.45
SHMT1-203ENST00000354098 DPCR1Q3MIW9 517 aa24.14■■□□□ 1.45
SHMT1-203ENST00000354098 ALKAL1Q6UXT8 129 aa24.14■■□□□ 1.45
SHMT1-203ENST00000354098 C12orf56Q8IXR9 622 aa24.14■■□□□ 1.45
SHMT1-203ENST00000354098 CMTR2Q8IYT2 770 aaKnown RBP24.14■■□□□ 1.45
SHMT1-203ENST00000354098 GPD1LQ8N335 351 aa24.14■■□□□ 1.45
SHMT1-203ENST00000354098 GOLGA5Q8TBA6 731 aa24.14■■□□□ 1.45
SHMT1-203ENST00000354098 SYAP1Q96A49 352 aaPredicted RBP24.14■■□□□ 1.45
SHMT1-203ENST00000354098 NKX2-4Q9H2Z4 354 aa24.14■■□□□ 1.45
SHMT1-203ENST00000354098 FNDC1Q4ZHG4 1894 aaPredicted RBP24.14■■□□□ 1.45
SHMT1-203ENST00000354098 PTGESO14684 152 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 INPPL1O15357 1258 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 CALUO43852 315 aaPredicted RBP24.13■■□□□ 1.45
SHMT1-203ENST00000354098 EXTL3O43909 919 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 NR3C1P04150 777 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 NLRP12P59046 1061 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 RAB30Q15771 203 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 KYAT1Q16773 422 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 ANKRD40Q6AI12 368 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 SPRED2Q7Z698 418 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 RDH13Q8NBN7 331 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 P2RX5Q93086 422 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 DHTKD1Q96HY7 919 aaPredicted RBP24.13■■□□□ 1.45
SHMT1-203ENST00000354098 SNX27Q96L92 541 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 TOPORSQ9NS56 1045 aaPredicted RBP24.13■■□□□ 1.45
SHMT1-203ENST00000354098 TBC1D13Q9NVG8 400 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 DMAC2Q9NW81 257 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 MSRAQ9UJ68 235 aa24.13■■□□□ 1.45
SHMT1-203ENST00000354098 MRPL42Q9Y6G3 142 aaKnown RBP24.13■■□□□ 1.45
SHMT1-203ENST00000354098 PSMA7O14818 248 aa24.12■■□□□ 1.45
SHMT1-203ENST00000354098 LDHAP00338 332 aaKnown RBP24.12■■□□□ 1.45
SHMT1-203ENST00000354098 DNAJB2P25686 324 aa24.12■■□□□ 1.45
SHMT1-203ENST00000354098 GLRA4Q5JXX5 417 aa24.12■■□□□ 1.45
SHMT1-203ENST00000354098 CBWD2Q8IUF1 395 aa24.12■■□□□ 1.45
SHMT1-203ENST00000354098 XXYLT1Q8NBI6 393 aa24.12■■□□□ 1.45
SHMT1-203ENST00000354098 RPF1Q9H9Y2 349 aaKnown RBP24.12■■□□□ 1.45
SHMT1-203ENST00000354098 CTNND2Q9UQB3 1225 aa24.12■■□□□ 1.45
SHMT1-203ENST00000354098 TTC26A0AVF1 554 aa24.11■■□□□ 1.45
SHMT1-203ENST00000354098 LINC01553A4QN01 128 aa24.11■■□□□ 1.45
SHMT1-203ENST00000354098 B4GALT3O60512 393 aa24.11■■□□□ 1.45
SHMT1-203ENST00000354098 CCNE1P24864 410 aa24.11■■□□□ 1.45
SHMT1-203ENST00000354098 SPAG1Q07617 926 aa24.11■■□□□ 1.45
SHMT1-203ENST00000354098 XKR4Q5GH76 650 aa24.11■■□□□ 1.45
SHMT1-203ENST00000354098 ZNF280BQ86YH2 543 aa24.11■■□□□ 1.45
SHMT1-203ENST00000354098 FIBCD1Q8N539 461 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms