RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 NFASCO94856 1347 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 ZNF541Q9H0D2 1346 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 LMBRD2Q68DH5 695 aaPredicted RBP16.61■□□□□ 0.25
UPF3B-202ENST00000345865 TMC3Q7Z5M5 1100 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 TRPM4Q8TD43 1214 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 ATP6V1G3Q96LB4 118 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 NT5C1BQ96P26 610 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 TMBIM4Q9HC24 238 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 ARHGAP28Q9P2N2 729 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 TCRBV7S2A1N4TA0A589 114 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 SPATA31C2B4DYI2 1134 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 CYP1A2P05177 515 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 DR1Q01658 176 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 CDR2Q01850 454 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 ZNF844Q08AG5 666 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 MTERF2Q49AM1 385 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 BRDTQ58F21 947 aaPredicted RBP16.61■□□□□ 0.25
UPF3B-202ENST00000345865 DUPD1Q68J44 220 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 KDM7AQ6ZMT4 941 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 CYFIP1Q7L576 1253 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 GPD1LQ8N335 351 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 PRELID2Q8N945 189 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 LRRC45Q96CN5 670 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 C18orf8Q96DM3 657 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 KLRG1Q96E93 195 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 RPS6KC1Q96S38 1066 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 NUP85Q9BW27 656 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 TEX13BQ9BXU2 312 aa16.61■□□□□ 0.25
UPF3B-202ENST00000345865 POLR3FQ9H1D9 316 aaPredicted RBP16.61■□□□□ 0.25
UPF3B-202ENST00000345865 SPDYE16A6NNV3 312 aaPredicted RBP16.6■□□□□ 0.25
UPF3B-202ENST00000345865 MIF4GDA9UHW6 222 aaKnown RBP16.6■□□□□ 0.25
UPF3B-202ENST00000345865 TRIM66O15016 1216 aa16.6■□□□□ 0.25
UPF3B-202ENST00000345865 PYGMP11217 842 aa16.6■□□□□ 0.25
UPF3B-202ENST00000345865 CTNNA1P35221 906 aaKnown RBP16.6■□□□□ 0.25
UPF3B-202ENST00000345865 EMC10Q5UCC4 262 aa16.6■□□□□ 0.25
UPF3B-202ENST00000345865 LRIG3Q6UXM1 1119 aa16.6■□□□□ 0.25
UPF3B-202ENST00000345865 C1orf131Q8NDD1 294 aaKnown RBP16.6■□□□□ 0.25
UPF3B-202ENST00000345865 MCPH1Q8NEM0 835 aa16.6■□□□□ 0.25
UPF3B-202ENST00000345865 ZNF564Q8TBZ8 553 aaPredicted RBP16.6■□□□□ 0.25
UPF3B-202ENST00000345865 ACAD9Q9H845 621 aa16.6■□□□□ 0.25
UPF3B-202ENST00000345865 ZDHHC18Q9NUE0 388 aa16.6■□□□□ 0.25
UPF3B-202ENST00000345865 ANKRD65E5RJM6 399 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 MYO1CO00159 1063 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 ATP2A1O14983 1001 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 PTGIRP43119 386 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 RTP1P59025 263 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 TTC27Q6P3X3 843 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 C15orf39Q6ZRI6 1047 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 BCAS4Q8TDM0 211 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 ZNF653Q96CK0 615 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 NAP1L3Q99457 506 aaPredicted RBP16.59■□□□□ 0.25
UPF3B-202ENST00000345865 ERP44Q9BS26 406 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 HAPLN2Q9GZV7 340 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 ATP6V0A4Q9HBG4 840 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 FAM114A2Q9NRY5 505 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 SYNGAP1Q96PV0 1343 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 SSC5DA1L4H1 1573 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 C19orf81C9J6K1 198 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 MYO1FO00160 1098 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 NR1D1P20393 614 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 GARTP22102 1010 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 GTF2H1P32780 548 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 PDE6CP51160 858 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 GUCY1A3Q02108 690 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 DHX9Q08211 1270 aaKnown RBP16.59■□□□□ 0.25
UPF3B-202ENST00000345865 JAMLQ86YT9 394 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 UBL4BQ8N7F7 174 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 UBLCP1Q8WVY7 318 aaPredicted RBP16.59■□□□□ 0.25
UPF3B-202ENST00000345865 TMEM143Q96AN5 459 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 BICD1Q96G01 975 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 TXLNGYQ9BZA5 131 aa16.59■□□□□ 0.25
UPF3B-202ENST00000345865 SUPT20HL2P0C7V6 817 aa16.58■□□□□ 0.25
UPF3B-202ENST00000345865 CNTN2Q02246 1040 aa16.58■□□□□ 0.25
UPF3B-202ENST00000345865 SUPT20HL1Q3ZLR7 823 aa16.58■□□□□ 0.25
UPF3B-202ENST00000345865 GTF3C4Q9UKN8 822 aa16.58■□□□□ 0.25
UPF3B-202ENST00000345865 PTPRJQ12913 1337 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 GOLGA6L10A0A0M3HER8 536 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 HMGB1P1B2RPK0 211 aaPredicted RBP16.58■□□□□ 0.24
UPF3B-202ENST00000345865 KIAA0391O15091 583 aaKnown RBP16.58■□□□□ 0.24
UPF3B-202ENST00000345865 CTNNA2P26232 953 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 CCT5P48643 541 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 NLRP11P59045 1033 aaKnown RBP16.58■□□□□ 0.24
UPF3B-202ENST00000345865 IRX5P78411 483 aaPredicted RBP16.58■□□□□ 0.24
UPF3B-202ENST00000345865 PPARDQ03181 441 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 PRKG1Q13976 671 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 EMC2Q15006 297 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 ACAD10Q6JQN1 1059 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 ZDHHC24Q6UX98 284 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 ZBTB45Q96K62 511 aaPredicted RBP16.58■□□□□ 0.24
UPF3B-202ENST00000345865 CENPHQ9H3R5 247 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 SNX24Q9Y343 169 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 AFG3L2Q9Y4W6 797 aa16.58■□□□□ 0.24
UPF3B-202ENST00000345865 POLR2AP24928 1970 aaKnown RBP16.58■□□□□ 0.24
UPF3B-202ENST00000345865 DKC1O60832 514 aaKnown RBP eCLIP16.57■□□□□ 0.248e-7■■■□□ 17.2
UPF3B-202ENST00000345865 PHF2O75151 1096 aa16.57■□□□□ 0.24
UPF3B-202ENST00000345865 EDN1P05305 212 aa16.57■□□□□ 0.24
UPF3B-202ENST00000345865 KRT5P13647 590 aa16.57■□□□□ 0.24
UPF3B-202ENST00000345865 ACOT2P49753 483 aa16.57■□□□□ 0.24
UPF3B-202ENST00000345865 XKR3Q5GH77 459 aa16.57■□□□□ 0.24
UPF3B-202ENST00000345865 CRELD2Q6UXH1 353 aaPredicted RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms