RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 NHEJ1Q9H9Q4 299 aaPredicted RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 HDAC6Q9UBN7 1215 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 Q9Y3F1 56 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 MBLAC1A4D2B0 266 aaPredicted RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 RRN3P2A6NIE6 340 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ZNF263O14978 683 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 CLDN3O15551 220 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ASAP2O43150 1006 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 SEPT4O43236 478 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ADAMTS4O75173 837 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 OFD1O75665 1012 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 CCDC175P0C221 793 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 RARBP10826 455 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 CYP2C9P11712 490 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 PROZP22891 400 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 TMOD1P28289 359 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ABCD1P33897 745 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 EIF4A3P38919 411 aaKnown RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 PHKA2P46019 1235 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 GJA9P57773 515 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 MCCD1P59942 119 aaPredicted RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 CYP27A1Q02318 531 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ZNF568Q3ZCX4 644 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ATF7IP2Q5U623 682 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 SFMBT2Q5VUG0 894 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 SLFN12LQ6IEE8 588 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 SV2AQ7L0J3 742 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ARHGEF19Q8IW93 802 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 TMEM192Q8IY95 271 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 THNSL1Q8IYQ7 743 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 TMEM130Q8N3G9 435 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 TMC2Q8TDI7 906 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 DNAJB3Q8WWF6 145 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 KAT5Q92993 513 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 IQCDQ96DY2 449 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 SPAG5Q96R06 1193 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 MAP7D2Q96T17 732 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 PI4K2AQ9BTU6 479 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 IRX2Q9BZI1 471 aaPredicted RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 EDEM3Q9BZQ6 932 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ADAMTS10Q9H324 1103 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 PTPRHQ9HD43 1115 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 LZTFL1Q9NQ48 299 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ZNHIT6Q9NWK9 470 aaKnown RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 RBAKQ9NYW8 714 aaPredicted RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 DNAJC12Q9UKB3 198 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 EPN1Q9Y6I3 576 aaPredicted RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 NRCAMQ92823 1304 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 CASP8AP2Q9UKL3 1982 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 CNTNAP2Q9UHC6 1331 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 FAM170AA1A519 330 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 FANCGO15287 622 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 MEFVO15553 781 aaPredicted RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 TSPAN1O60635 241 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 TNNT1P13805 278 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ARF4P18085 180 aaPredicted RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 SCP2P22307 547 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 JAM2P57087 298 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 MCL1Q07820 350 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 PSMD6Q15008 389 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 PTPN14Q15678 1187 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ARHGAP44Q17R89 818 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 MPZL3Q6UWV2 235 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 TSHZ1Q6ZSZ6 1077 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 C7orf31Q8N865 590 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 EHBP1Q8NDI1 1231 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 OR5B17Q8NGF7 314 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 RAET1EQ8TD07 263 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ZNF296Q8WUU4 475 aaPredicted RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 TMEM40Q8WWA1 233 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 ZNF592Q92610 1267 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 MARVELD3Q96A59 401 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 FAM212AQ96EL1 285 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 HS3ST6Q96QI5 342 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 OSMRQ99650 979 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 NFKBIZQ9BYH8 718 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 GPR88Q9GZN0 384 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 UPF3AQ9H1J1 476 aaKnown RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 CDT1Q9H211 546 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 PDZD7Q9H5P4 517 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 TMEM8AQ9HCN3 771 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 XPNPEP3Q9NQH7 507 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 PRMT7Q9NVM4 692 aaPredicted RBP4.49□□□□□ -1.69
MCF2-201ENST00000338585 APEX2Q9UBZ4 518 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 TRIM10Q9UDY6 481 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 TNFSF13BQ9Y275 285 aa4.49□□□□□ -1.69
MCF2-201ENST00000338585 SMIM35A0A1B0GVV1 85 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 C17orf102A2RUQ5 167 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 RCCD1A6NED2 376 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 F8VZ95 297 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 OGTO15294 1046 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 ZSCAN12O43309 604 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 ZEB2O60315 1214 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 N4BP1O75113 896 aaKnown RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 GPR32O75388 356 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 GFPT2O94808 682 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 HMGCRP04035 888 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 TNNI1P19237 187 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 HOXC8P31273 242 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 ARHGAP25P42331 645 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms