RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 NBPF20Q3BBV1 942 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 NBPF10Q6P3W6 841 aaKnown RBP13.34□□□□□ -0.27
SDC3-201ENST00000336798 EFHBQ8N7U6 833 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 ATP11CQ8NB49 1132 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 EIF2AK1Q9BQI3 630 aaKnown RBP13.34□□□□□ -0.27
SDC3-201ENST00000336798 BRIP1Q9BX63 1249 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 MUC3BQ9H195 1237 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 SH3GLB2Q9NR46 395 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 MINPP1Q9UNW1 487 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 ADGRA2Q96PE1 1338 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 BRAFP15056 766 aa13.33□□□□□ -0.27
SDC3-201ENST00000336798 TPI1P60174 286 aa13.33□□□□□ -0.27
SDC3-201ENST00000336798 ARL6IP4Q66PJ3 421 aaKnown RBP13.33□□□□□ -0.27
SDC3-201ENST00000336798 KRT39Q6A163 491 aa13.33□□□□□ -0.27
SDC3-201ENST00000336798 SLC25A41Q8N5S1 370 aa13.33□□□□□ -0.27
SDC3-201ENST00000336798 HPS3Q969F9 1004 aa13.33□□□□□ -0.27
SDC3-201ENST00000336798 SELENONQ9NZV5 590 aa13.33□□□□□ -0.27
SDC3-201ENST00000336798 AGO2Q9UKV8 859 aaKnown RBP13.33□□□□□ -0.27
SDC3-201ENST00000336798 CYP26A1O43174 497 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 WBP4O75554 376 aaKnown RBP13.33□□□□□ -0.28
SDC3-201ENST00000336798 HMOX2P30519 316 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 MTM1Q13496 603 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 GTF2H3Q13889 308 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 CAPRIN2Q6IMN6 1127 aaKnown RBP13.33□□□□□ -0.28
SDC3-201ENST00000336798 GPD1LQ8N335 351 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 CELF1Q92879 486 aaKnown RBP13.33□□□□□ -0.28
SDC3-201ENST00000336798 LRRC37BQ96QE4 947 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 KIAA1586Q9HCI6 787 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 CACNA2D2Q9NY47 1150 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 MAP3K20Q9NYL2 800 aaKnown RBP13.33□□□□□ -0.28
SDC3-201ENST00000336798 HSPBP1Q9NZL4 362 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 C6orf203Q9P0P8 240 aaPredicted RBP13.33□□□□□ -0.28
SDC3-201ENST00000336798 ERVV-1B6SEH8 477 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 TNPO2O14787 897 aaKnown RBP13.33□□□□□ -0.28
SDC3-201ENST00000336798 GRAP2O75791 330 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 IZUMO3Q5VZ72 239 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 IL31Q6EBC2 164 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 ITPRIPL1Q6GPH6 555 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 CPA5Q8WXQ8 436 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 ELMO2Q96JJ3 720 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 FAM118BQ9BPY3 351 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 LZTS1Q9Y250 596 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 P4HBP07237 508 aaKnown RBP13.33□□□□□ -0.28
SDC3-201ENST00000336798 KRT76Q01546 638 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 SGO1Q5FBB7 561 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 CCDC137Q6PK04 289 aaKnown RBP13.33□□□□□ -0.28
SDC3-201ENST00000336798 TMEM143Q96AN5 459 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 CD209Q9NNX6 404 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 PAIP2BQ9ULR5 123 aaKnown RBP13.33□□□□□ -0.28
SDC3-201ENST00000336798 PDAP1Q13442 181 aaKnown RBP13.33□□□□□ -0.28
SDC3-201ENST00000336798 MTMR2Q13614 643 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 KDM4CQ9H3R0 1056 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 ATP7AQ04656 1500 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 ABCC2Q92887 1545 aa13.33□□□□□ -0.28
SDC3-201ENST00000336798 CHUKO15111 745 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 CYBBP04839 570 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 EPB42P16452 691 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 ETFBP38117 255 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 LRRC36Q1X8D7 754 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 RAB42Q8N4Z0 105 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 C2orf40Q9H1Z8 148 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 ENO1P06733 434 aaKnown RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 TBXAS1P24557 533 aaPredicted RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 EIF3EP60228 445 aaKnown RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 WASHC5Q12768 1159 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 PWP1Q13610 501 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 PRAMEF18Q5VWM3 479 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 CDKL3Q8IVW4 592 aaPredicted RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 ENAHQ8N8S7 591 aaPredicted RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 TMA16Q96EY4 203 aaKnown RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 NOP53Q9NZM5 478 aaKnown RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 BFARQ9NZS9 450 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 DIS3Q9Y2L1 958 aaKnown RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 C5orf58C9J3I9 102 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 ZNF197O14709 1029 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 ATP8B1O43520 1251 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 TXNP10599 105 aaKnown RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 ACOT2P49753 483 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 KDSRQ06136 332 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 QRICH1Q2TAL8 776 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 HS6ST3Q8IZP7 471 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 V9GYQ6 96 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 EFCAB14O75071 495 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 NMT1P30419 496 aaKnown RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 KCNJ6P48051 423 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 ST8SIA6P61647 398 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 KRT17Q04695 432 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 SNX31Q8N9S9 440 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 PABPC5Q96DU9 382 aaKnown RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 SNF8Q96H20 258 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 DNAJC7Q99615 494 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 ACAD9Q9H845 621 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 F5H6K3 240 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 KLRC3Q07444 240 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 SF3B3Q15393 1217 aaKnown RBP13.32□□□□□ -0.28
SDC3-201ENST00000336798 ICA1LQ8NDH6 482 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 OSBPL9Q96SU4 736 aa13.32□□□□□ -0.28
SDC3-201ENST00000336798 CCDC151A5D8V7 595 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 LGALS16A8MUM7 142 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 CCDC188H7C350 402 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms