RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 EVI5O60447 810 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 MMEP08473 750 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 KIAA1755Q5JYT7 1200 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 BEND6Q5SZJ8 279 aaPredicted RBP10.79□□□□□ -0.68
CHD3-201ENST00000330494 ALS2CLQ60I27 953 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 FRMD5Q7Z6J6 570 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 RAPGEF5Q92565 580 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 WDR24Q96S15 920 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 LIMA1Q9UHB6 759 aaKnown RBP10.79□□□□□ -0.68
CHD3-201ENST00000330494 INO80Q9ULG1 1556 aaPredicted RBP10.79□□□□□ -0.68
CHD3-201ENST00000330494 E2F8A0AVK6 867 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 SLC37A4O43826 429 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 KRT14P02533 472 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 NR3C2P08235 984 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 PMS2P54278 862 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 HNRNPH2P55795 449 aaKnown RBP10.79□□□□□ -0.68
CHD3-201ENST00000330494 UBA3Q8TBC4 463 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 ALDH8A1Q9H2A2 487 aaPredicted RBP10.79□□□□□ -0.68
CHD3-201ENST00000330494 FAM49BQ9NUQ9 324 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 PARVAQ9NVD7 372 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 DCTN4Q9UJW0 460 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 SPATA31A6Q5VVP1 1343 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 GOLGA8RI6L899 631 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 ADCY2Q08462 1091 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 ORC1Q13415 861 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 BTBD8Q5XKL5 378 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 HHIPL2Q6UWX4 724 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 EDEM3Q9BZQ6 932 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 LOC102724159A0A0B4J2E5 919 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 TADA2AO75478 443 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 EMC2Q15006 297 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 PWP2Q15269 919 aaKnown RBP10.79□□□□□ -0.68
CHD3-201ENST00000330494 SNRNP35Q16560 246 aaKnown RBP10.79□□□□□ -0.68
CHD3-201ENST00000330494 TAF1BQ53T94 588 aaPredicted RBP10.79□□□□□ -0.68
CHD3-201ENST00000330494 SPATA2LQ8IUW3 424 aaPredicted RBP10.79□□□□□ -0.68
CHD3-201ENST00000330494 TRIM42Q8IWZ5 723 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 KLK14Q9P0G3 267 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 HADHAP40939 763 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 NLRP11P59045 1033 aaKnown RBP10.79□□□□□ -0.68
CHD3-201ENST00000330494 NFIAQ12857 509 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 MXD4Q14582 209 aaPredicted RBP10.79□□□□□ -0.68
CHD3-201ENST00000330494 TXNRD3Q86VQ6 643 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 TRIM59Q8IWR1 403 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 SLC35G2Q8TBE7 412 aa10.79□□□□□ -0.68
CHD3-201ENST00000330494 MGEA5O60502 916 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 FDPSP14324 419 aaKnown RBP10.78□□□□□ -0.68
CHD3-201ENST00000330494 ARSEP51690 589 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 NCOA4Q13772 614 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 TMEM132DQ14C87 1099 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 NCAPHQ15003 741 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 FAM151AQ8WW52 585 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 MCEEQ96PE7 176 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 CAPN11Q9UMQ6 739 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 KCNN4O15554 427 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 KRT10P13645 584 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 EFHC2Q5JST6 749 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 PITPNM3Q9BZ71 974 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 ANLNQ9NQW6 1124 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 EPS15L1Q9UBC2 864 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 KDM6AO15550 1401 aaPredicted RBP10.78□□□□□ -0.68
CHD3-201ENST00000330494 ESRRAP11474 423 aaPredicted RBP10.78□□□□□ -0.68
CHD3-201ENST00000330494 BCAR1P56945 870 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 KRT17Q04695 432 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 BARGINQ6ZT62 677 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 RFX8Q6ZV50 586 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 TRMT10CQ7L0Y3 403 aaKnown RBP10.78□□□□□ -0.68
CHD3-201ENST00000330494 LPAR1Q92633 364 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 UNC45AQ9H3U1 944 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 FZD1Q9UP38 647 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 C2CD2LO14523 706 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 SLC9A1P19634 815 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 HUNKP57058 714 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 SMTNL2Q2TAL5 461 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 CRLF3Q8IUI8 442 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 CCNYL1Q8N7R7 359 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 OR6P1Q8NGX9 317 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.78□□□□□ -0.686e-7■■■■■ 33.9
CHD3-201ENST00000330494 SNX2O60749 519 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 PGK2P07205 417 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 PDIA5Q14554 519 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 ACSF2Q96CM8 615 aaPredicted RBP10.78□□□□□ -0.68
CHD3-201ENST00000330494 HVCN1Q96D96 273 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 MXRA8Q9BRK3 442 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 PPARGC1AQ9UBK2 798 aaKnown RBP10.78□□□□□ -0.68
CHD3-201ENST00000330494 HPS5Q9UPZ3 1129 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 FHOD1Q9Y613 1164 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 E5RI56 91 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 TAS2R42Q7RTR8 314 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 PIP4K2CQ8TBX8 421 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 TMEM117Q9H0C3 514 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 GOLPH3Q9H4A6 298 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 SMARCAD1Q9H4L7 1026 aa10.78□□□□□ -0.68
CHD3-201ENST00000330494 MEGF6O75095 1541 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 IQGAP1P46940 1657 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 RSPH10B2B2RC85 870 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 CCDC188H7C350 402 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 RSPH10BP0C881 870 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 RANBP1P43487 201 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 EIF3EP60228 445 aaKnown RBP10.77□□□□□ -0.68
CHD3-201ENST00000330494 NOP14P78316 857 aaKnown RBP10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms