RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 ERMARDQ5T6L9 678 aa16.7■□□□□ 0.26
SHROOM1-201ENST00000319854 XXYLT1Q8NBI6 393 aa16.7■□□□□ 0.26
SHROOM1-201ENST00000319854 AGAP11Q8TF27 550 aa16.7■□□□□ 0.26
SHROOM1-201ENST00000319854 BICD1Q96G01 975 aa16.7■□□□□ 0.26
SHROOM1-201ENST00000319854 RSRC1Q96IZ7 334 aaKnown RBP16.7■□□□□ 0.26
SHROOM1-201ENST00000319854 PI4K2AQ9BTU6 479 aa16.7■□□□□ 0.26
SHROOM1-201ENST00000319854 GGT7Q9UJ14 662 aa16.7■□□□□ 0.26
SHROOM1-201ENST00000319854 NOC2LQ9Y3T9 749 aaKnown RBP16.7■□□□□ 0.26
SHROOM1-201ENST00000319854 ZNF646O15015 1829 aaPredicted RBP16.7■□□□□ 0.26
SHROOM1-201ENST00000319854 CAND2O75155 1236 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 NR3C2P08235 984 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 PEX19P40855 299 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 SLC8A3P57103 927 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 BIRC2Q13490 618 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 ARHGAP27Q6ZUM4 889 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 ANO5Q75V66 913 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 BZW1Q7L1Q6 419 aaKnown RBP16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 ZBED3Q96IU2 234 aaPredicted RBP16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 ZNF317Q96PQ6 595 aaPredicted RBP16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 NR2E1Q9Y466 385 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 BHMG1C9JSJ3 638 aaPredicted RBP16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 SSTR3P32745 418 aaPredicted RBP16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 PRKCIP41743 596 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 TMC3Q7Z5M5 1100 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 LRRC57Q8N9N7 239 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 CCDC63Q8NA47 563 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 RNF217Q8TC41 542 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 BSNDQ8WZ55 320 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 ZNF570Q96NI8 536 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 DPH5Q9H2P9 285 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 CTTNBP2NLQ9P2B4 639 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 SEPT9Q9UHD8 586 aaPredicted RBP16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 CYP26A1O43174 497 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 GCKP35557 465 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 MXI1P50539 228 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 DHX9Q08211 1270 aaKnown RBP16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 CUL1Q13616 776 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 EEPD1Q7L9B9 569 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 MTMR14Q8NCE2 650 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 CCDC197Q8NCU1 140 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 DHX38Q92620 1227 aaKnown RBP16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 BTBD6Q96KE9 485 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 SLC12A4Q9UP95 1085 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 C15orf41Q9Y2V0 281 aa16.69■□□□□ 0.26
SHROOM1-201ENST00000319854 COL2A1P02458 1487 aaPredicted RBP16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 WDR64B1ANS9 1081 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 PLA2G6O60733 806 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 FGGP02679 453 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 SHBGP04278 402 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 C2CD6Q53TS8 623 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 CPNE8Q86YQ8 564 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 TBC1D22BQ9NU19 505 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 TTI1O43156 1089 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 SGPL1O95470 568 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 FTLP02792 175 aaPredicted RBP16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 HARSP12081 509 aaKnown RBP16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 NPTX2P47972 431 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 BACE1P56817 501 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 PSMC5P62195 406 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 KCNJ2P63252 427 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 CETN1Q12798 172 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 IFI16Q16666 785 aaKnown RBP16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 MTERF2Q49AM1 385 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 RPUSD2Q8IZ73 545 aaKnown RBP16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 POMGNT1Q8WZA1 660 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 PRCCQ92733 491 aaPredicted RBP16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 MKNK1Q9BUB5 465 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 KMT5AQ9NQR1 393 aa16.68■□□□□ 0.26
SHROOM1-201ENST00000319854 RPTORQ8N122 1335 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 ZNF862O60290 1169 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 CHN1P15882 459 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 FSTL1Q12841 308 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 SNRNP35Q16560 246 aaKnown RBP16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 LRRC34Q8IZ02 419 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 TRPC6Q9Y210 931 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 GTPBP10A4D1E9 387 aaKnown RBP16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 HNRNPDLO14979 420 aaKnown RBP16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 CNGA1P29973 690 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 ADSSP30520 456 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 IRX1P78414 480 aaPredicted RBP16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 DMP1Q13316 513 aaPredicted RBP16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 INTS8Q75QN2 995 aaKnown RBP16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 SLC47A2Q86VL8 602 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 TRPM4Q8TD43 1214 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 TLCD1Q96CP7 247 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 FAM129AQ9BZQ8 928 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 TMEM117Q9H0C3 514 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 TMEM206Q9H813 350 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 ABCF3Q9NUQ8 709 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 KCND2Q9NZV8 630 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 AMFRQ9UKV5 643 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 COG5Q9UP83 839 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 EIF4E1BA6NMX2 242 aaKnown RBP16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 A8MUI8 341 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 PGRMC1O00264 195 aaKnown RBP16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 UPP2O95045 317 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 ZBTB48P10074 688 aaPredicted RBP16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 BCRP11274 1271 aa16.67■□□□□ 0.26
SHROOM1-201ENST00000319854 LMNB1P20700 586 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms