RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 NUP85Q9BW27 656 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 DHX36Q9H2U1 1008 aaKnown RBP10.95□□□□□ -0.66
CLIP1-201ENST00000302528 NCKAP5LQ9HCH0 1330 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 ATP10AO60312 1499 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 ERVV-2B6SEH9 535 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 USP17L2Q6R6M4 530 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 PAGE5Q96GU1 130 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 DBNDD1Q9H9R9 158 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 DDX56Q9NY93 547 aaKnown RBP10.95□□□□□ -0.66
CLIP1-201ENST00000302528 PCDHB8Q9UN66 801 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 ZC3H4Q9UPT8 1303 aaKnown RBP10.95□□□□□ -0.66
CLIP1-201ENST00000302528 PCCAP05165 728 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-201ENST00000302528 ENO1P06733 434 aaKnown RBP10.95□□□□□ -0.66
CLIP1-201ENST00000302528 SOAT1P35610 550 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 GCLMP48507 274 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 ST13P50502 369 aaKnown RBP10.95□□□□□ -0.66
CLIP1-201ENST00000302528 ERFP50548 548 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 SLFNL1Q499Z3 407 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 MDH1BQ5I0G3 518 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 MTHFD1LQ6UB35 978 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 MIGA2Q7L4E1 593 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 TLK2Q86UE8 772 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 IFNEQ86WN2 208 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.95□□□□□ -0.66
CLIP1-201ENST00000302528 DTNBP1Q96EV8 351 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 MRPL1Q9BYD6 325 aaKnown RBP10.95□□□□□ -0.66
CLIP1-201ENST00000302528 GGCXP38435 758 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 SNAP25P60880 206 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 DYNLL1P63167 89 aaKnown RBP10.95□□□□□ -0.66
CLIP1-201ENST00000302528 NLRP14Q86W24 1093 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 C10orf53Q8N6V4 93 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 MCPH1Q8NEM0 835 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 GRAMD1AQ96CP6 724 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 SNF8Q96H20 258 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 FAM213AQ9BRX8 229 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 UTP6Q9NYH9 597 aaKnown RBP10.95□□□□□ -0.66
CLIP1-201ENST00000302528 CEP72Q9P209 647 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 TRPM1Q7Z4N2 1603 aa10.95□□□□□ -0.66
CLIP1-201ENST00000302528 SRP72O76094 671 aaKnown RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 ENO3P13929 434 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 EIF4A1P60842 406 aaKnown RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 FHDC1Q9C0D6 1143 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 CCDC134Q9H6E4 229 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 LATS2Q9NRM7 1088 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 GID8Q9NWU2 228 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 A0A087WWV3 80 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 RNF103O00237 685 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 TBXAS1P24557 533 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 CACNB2Q08289 660 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 ZNF211Q13398 564 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 LRRC36Q1X8D7 754 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 USPL1Q5W0Q7 1092 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 CCDC103Q8IW40 242 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 XXYLT1Q8NBI6 393 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 SPATA16Q9BXB7 569 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 USP44Q9H0E7 712 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 PKP3Q9Y446 797 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 RGS12O14924 1447 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 ATP7AQ04656 1500 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 MFAP3LO75121 409 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 FYNP06241 537 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 PNMA6AP0CW24 399 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 HSD17B4P51659 736 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 KIF23Q02241 960 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 SHROOM1Q2M3G4 852 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 OLFML2BQ68BL8 750 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 ARMC6Q6NXE6 501 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 SH3BP5LQ7L8J4 393 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 SNX31Q8N9S9 440 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 GIMAP8Q8ND71 665 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 SIKE1Q9BRV8 207 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 ALG13Q9NP73 1137 aaKnown RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 ABCC4O15439 1325 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 SRGAP2O75044 1071 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 PDE8BO95263 885 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 ALDH1A1P00352 501 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 GNA15P30679 374 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 SOX11P35716 441 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 MTFR1Q15390 333 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 ALFQ53S48 1182 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 FAM102AQ5T9C2 384 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-201ENST00000302528 CCDC149Q6ZUS6 474 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 PIGOQ8TEQ8 1089 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 C19orf60Q96EN9 201 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 SH3GL1Q99961 368 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 MAN1C1Q9NR34 630 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 PI4KBQ9UBF8 816 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 GTF2A1LQ9UNN4 478 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 ASXL2Q76L83 1435 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 A8MXQ7 604 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 GOLGA8TH3BQL2 631 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 MLNP12872 115 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 C17orf80Q9BSJ5 609 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 SEPT3Q9UH03 358 aa10.94□□□□□ -0.66
CLIP1-201ENST00000302528 TTC37Q6PGP7 1564 aa10.93□□□□□ -0.66
CLIP1-201ENST00000302528 PNMA6FA0A0J9YX94 578 aa10.93□□□□□ -0.66
CLIP1-201ENST00000302528 TMEM191CA6NGB0 347 aa10.93□□□□□ -0.66
CLIP1-201ENST00000302528 NBPF26B4DH59 902 aa10.93□□□□□ -0.66
CLIP1-201ENST00000302528 GUCA1AP43080 201 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-201ENST00000302528 NBPF15Q8N660 670 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms