RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FSHRP23945 695 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 HOXA9P31269 272 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 ELAVL2Q12926 359 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 HSP90AA2PQ14568 343 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 MTSS1LQ765P7 747 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 C1orf210Q8IVY1 113 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 GSTCDQ8NEC7 633 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 ASAP3Q8TDY4 903 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 HSD17B14Q9BPX1 270 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 TTPALQ9BTX7 342 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 PARP2Q9UGN5 583 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 XYLBO75191 536 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 NPTXRO95502 500 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 MYBP10242 640 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 GLRA2P23416 452 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 AKAP5P24588 427 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 KRT2P35908 639 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 SCRN1Q12765 414 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 TUSC3Q13454 348 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 CALCRLQ16602 461 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 GLYCTKQ8IVS8 523 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 PJA1Q8NG27 643 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 OXER1Q8TDS5 423 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 PIK3R5Q8WYR1 880 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 B3GALT6Q96L58 329 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 LARP6Q9BRS8 491 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 POLR3FQ9H1D9 316 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 PRMT7Q9NVM4 692 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 DLGAP2Q9P1A6 1054 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 FBXW11Q9UKB1 542 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 CDH7Q9ULB5 785 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 NUMBLQ9Y6R0 609 aa16.37■□□□□ 0.21
CCDC88B-201ENST00000301897 PFKFB2O60825 505 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 DCNP07585 359 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 POU2F2P09086 479 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 RARRES1P49788 294 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 STARD6P59095 220 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 SPECC1Q5M775 1068 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 PPM1LQ5SGD2 360 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 PPP4R3CPQ6ZMV5 832 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 RTL10Q7L3V2 364 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 ZBTB8OSQ8IWT0 167 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 MCPH1Q8NEM0 835 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 R4GN57 208 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 MIA3Q5JRA6 1907 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 DOCK6Q96HP0 2047 aa16.36■□□□□ 0.21
CCDC88B-201ENST00000301897 MYH15Q9Y2K3 1946 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 NCOR2Q9Y618 2525 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 LRRIQ4A6NIV6 560 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 N4BP3O15049 544 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 B4GALT5O43286 388 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 THP07101 528 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 SP9P0CG40 484 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 RPL17P18621 184 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 MAGEA9P43362 315 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 PFKPQ01813 784 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 PRKCQQ04759 706 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 ANKRD1Q15327 319 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 PSMD5Q16401 504 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 FAM187BQ17R55 369 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 UVSSAQ2YD98 709 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 RSPO2Q6UXX9 243 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 RUBCNQ92622 972 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 HINFPQ9BQA5 517 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 OSBPL6Q9BZF3 934 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 C2orf40Q9H1Z8 148 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 TTC12Q9H892 705 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 KLK14Q9P0G3 267 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 ORC3Q9UBD5 711 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 GPR179Q6PRD1 2367 aa16.35■□□□□ 0.21
CCDC88B-201ENST00000301897 NEMFO60524 1076 aa16.34■□□□□ 0.21
CCDC88B-201ENST00000301897 ZNF528Q3MIS6 628 aa16.34■□□□□ 0.21
CCDC88B-201ENST00000301897 RTP2Q5QGT7 225 aa16.34■□□□□ 0.21
CCDC88B-201ENST00000301897 FAM171A1Q5VUB5 890 aa16.34■□□□□ 0.21
CCDC88B-201ENST00000301897 CDCA2Q69YH5 1023 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-201ENST00000301897 PRSS55Q6UWB4 352 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-201ENST00000301897 GRASPQ7Z6J2 395 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-201ENST00000301897 CEP57Q86XR8 500 aa16.34■□□□□ 0.21
CCDC88B-201ENST00000301897 CLSTN3Q9BQT9 956 aa16.34■□□□□ 0.21
CCDC88B-201ENST00000301897 ADPGKQ9BRR6 497 aa16.34■□□□□ 0.21
CCDC88B-201ENST00000301897 BCO2Q9BYV7 579 aa16.34■□□□□ 0.21
CCDC88B-201ENST00000301897 KANSL1LA0AUZ9 987 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 USO1O60763 962 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 KINO60870 393 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 C8AP07357 584 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 GPC5P78333 572 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 NR5A1Q13285 461 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 PUM1Q14671 1186 aaKnown RBP eCLIP16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 TMEM132AQ24JP5 1023 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 EARS2Q5JPH6 523 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 DGLUCYQ7Z3D6 616 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 CDR2LQ86X02 465 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 KIAA2013Q8IYS2 634 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 LNX1Q8TBB1 728 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 PIGOQ8TEQ8 1089 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 FGF14Q92915 247 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 TNFRSF25Q93038 417 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 FZD8Q9H461 694 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 FBXO4Q9UKT5 387 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 KCNH3Q9ULD8 1083 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms