RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 MOGSQ13724 837 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 ARHGEF18Q6ZSZ5 1173 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 MAPKAPK5Q8IW41 473 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 CCDC24Q8N4L8 307 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 DCLRE1BQ9H816 532 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 DNAJC18Q9H819 358 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 LRCH1Q9Y2L9 728 aa14.4□□□□□ -0.1
SKA3-201ENST00000298260 PODXLO00592 558 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 TTC4O95801 387 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 PCP11498 1178 aaKnown RBP14.39□□□□□ -0.11
SKA3-201ENST00000298260 MARK3P27448 753 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 CNPY1Q3B7I2 92 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 CBWD6Q4V339 395 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 CBWD3Q5JTY5 395 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 CBWD5Q5RIA9 395 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 C12orf60Q5U649 245 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 ATL2Q8NHH9 583 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 TUBGCP5Q96RT8 1024 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 ZSWIM1Q9BR11 485 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 HERPUD2Q9BSE4 406 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 RHBDL2Q9NX52 303 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 NINJ2Q9NZG7 142 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 ZNF804BA4D1E1 1349 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 TNS2Q63HR2 1409 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 POC1B-GALNT4F8VUJ3 575 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 FOXN3O00409 490 aaPredicted RBP14.39□□□□□ -0.11
SKA3-201ENST00000298260 TTLL1O95922 423 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 NR3C1P04150 777 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 RPA3P35244 121 aaPredicted RBP14.39□□□□□ -0.11
SKA3-201ENST00000298260 YARSP54577 528 aaKnown RBP14.39□□□□□ -0.11
SKA3-201ENST00000298260 STRN3Q13033 797 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 PDIA5Q14554 519 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 SIX1Q15475 284 aaPredicted RBP14.39□□□□□ -0.11
SKA3-201ENST00000298260 ZNF568Q3ZCX4 644 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 CCDC152Q4G0S7 254 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 CAVIN4Q5BKX8 364 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 LRRC74BQ6ZQY2 392 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 TXNRD3Q86VQ6 643 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 SCYL3Q8IZE3 742 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 RUSC1Q9BVN2 902 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 RAB34Q9BZG1 259 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 ROPN1BQ9BZX4 212 aaPredicted RBP14.39□□□□□ -0.11
SKA3-201ENST00000298260 GPR88Q9GZN0 384 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 ROPN1Q9HAT0 212 aaPredicted RBP14.39□□□□□ -0.11
SKA3-201ENST00000298260 ZFP69BQ9UJL9 534 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 NCANO14594 1321 aa14.39□□□□□ -0.11
SKA3-201ENST00000298260 PASKQ96RG2 1323 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 LOC102724428A0A0B4J2F2 783 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 ECEL1O95672 775 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 ALAS1P13196 640 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 SIK1P57059 783 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 CDR2Q01850 454 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 PPP2R5CQ13362 524 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 MTM1Q13496 603 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 SLC1A5Q15758 541 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 VPS72Q15906 364 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 GRIK5Q16478 980 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 KNOP1Q1ED39 458 aaKnown RBP14.38□□□□□ -0.11
SKA3-201ENST00000298260 RNF207Q6ZRF8 634 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 RUNDC3BQ96NL0 473 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 DHX36Q9H2U1 1008 aaKnown RBP14.38□□□□□ -0.11
SKA3-201ENST00000298260 QTRT2Q9H974 415 aaKnown RBP14.38□□□□□ -0.11
SKA3-201ENST00000298260 GPCPD1Q9NPB8 672 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 KRT82Q9NSB4 513 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 ARL8BQ9NVJ2 186 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 STOML1Q9UBI4 398 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.38□□□□□ -0.11
SKA3-201ENST00000298260 ASTN1O14525 1302 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 E7ENQ6 273 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 EXOC3O60645 756 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 BAG3O95817 575 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 GYS1P13807 737 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 IL9RQ01113 521 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 CYP4A11Q02928 519 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 CCDC15Q0P6D6 951 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 ACVR2BQ13705 512 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 SEL1L2Q5TEA6 688 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 SLC13A5Q86YT5 568 aaPredicted RBP14.38□□□□□ -0.11
SKA3-201ENST00000298260 FAM210AQ96ND0 272 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 REEP2Q9BRK0 252 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 TAOK3Q9H2K8 898 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 FBXO6Q9NRD1 293 aaPredicted RBP14.38□□□□□ -0.11
SKA3-201ENST00000298260 ATP8A2Q9NTI2 1148 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 ETNK2Q9NVF9 386 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 CHCHD3Q9NX63 227 aaKnown RBP14.38□□□□□ -0.11
SKA3-201ENST00000298260 SYNGAP1Q96PV0 1343 aa14.38□□□□□ -0.11
SKA3-201ENST00000298260 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.37□□□□□ -0.11
SKA3-201ENST00000298260 GCNT3O95395 438 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 FAM163BP0C2L3 166 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 SKIP12755 728 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 AMPD1P23109 780 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 RTP1P59025 263 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 WDR72Q3MJ13 1102 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 TRMT10CQ7L0Y3 403 aaKnown RBP14.37□□□□□ -0.11
SKA3-201ENST00000298260 NLRP9Q7RTR0 991 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 FRMD5Q7Z6J6 570 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 CCDC125Q86Z20 511 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 ZNF513Q8N8E2 541 aaPredicted RBP14.37□□□□□ -0.11
SKA3-201ENST00000298260 RFWD2Q8NHY2 731 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 C10orf82Q8WW14 230 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms