RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 GPR62Q9BZJ7 368 aa14.1□□□□□ -0.15
CD44-203ENST00000278386 FOXP1Q9H334 677 aaPredicted RBP14.1□□□□□ -0.15
CD44-203ENST00000278386 PDZD7Q9H5P4 517 aa14.1□□□□□ -0.15
CD44-203ENST00000278386 RXFP1Q9HBX9 757 aa14.1□□□□□ -0.15
CD44-203ENST00000278386 FBXL21Q9UKT6 434 aa14.1□□□□□ -0.15
CD44-203ENST00000278386 NOL7Q9UMY1 257 aaKnown RBP14.1□□□□□ -0.15
CD44-203ENST00000278386 DOCK6Q96HP0 2047 aa14.1□□□□□ -0.15
CD44-203ENST00000278386 H0Y858 1186 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 GALR2O43603 387 aaPredicted RBP14.09□□□□□ -0.15
CD44-203ENST00000278386 EFEMP2O95967 443 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 RPL17P18621 184 aaKnown RBP14.09□□□□□ -0.15
CD44-203ENST00000278386 RPA1P27694 616 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 CCT6AP40227 531 aaKnown RBP14.09□□□□□ -0.15
CD44-203ENST00000278386 NUBP1P53384 320 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 HMGN5P82970 282 aaKnown RBP14.09□□□□□ -0.15
CD44-203ENST00000278386 TUSC3Q13454 348 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 TDGQ13569 410 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 PPP2R5AQ15172 486 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 FAM187BQ17R55 369 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 ERICH6BQ5W0A0 696 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 ASTLQ6HA08 431 aaPredicted RBP14.09□□□□□ -0.15
CD44-203ENST00000278386 GET4Q7L5D6 327 aaPredicted RBP14.09□□□□□ -0.15
CD44-203ENST00000278386 TMEM105Q8N8V8 129 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 IFT74Q96LB3 600 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 LLPHQ9BRT6 129 aaKnown RBP14.09□□□□□ -0.15
CD44-203ENST00000278386 KIFC3Q9BVG8 833 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 KCNK12Q9HB15 430 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 CHST7Q9NS84 486 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 SNTG2Q9NY99 539 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 DUSP12Q9UNI6 340 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 USP34Q70CQ2 3546 aa14.09□□□□□ -0.15
CD44-203ENST00000278386 PDCD11Q14690 1871 aaKnown RBP14.08□□□□□ -0.16
CD44-203ENST00000278386 TTLL13PA6NNM8 815 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 TGM5O43548 720 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 GFRA3O60609 400 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 KIF4AO95239 1232 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 THP07101 528 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 CYP11B2P19099 503 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 RFX1P22670 979 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 NBR1Q14596 966 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 PRSS55Q6UWB4 352 aaPredicted RBP14.08□□□□□ -0.16
CD44-203ENST00000278386 CYP26C1Q6V0L0 522 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 CEP57Q86XR8 500 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 NOSTRINQ8IVI9 506 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 HDAC7Q8WUI4 952 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 PAAF1Q9BRP4 392 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 FZD8Q9H461 694 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 PLEKHA4Q9H4M7 779 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 WDR6Q9NNW5 1121 aaKnown RBP14.08□□□□□ -0.16
CD44-203ENST00000278386 FNIP2Q9P278 1114 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 USP20Q9Y2K6 914 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 GDAQ9Y2T3 454 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 CACNA1HO95180 2353 aa14.08□□□□□ -0.16
CD44-203ENST00000278386 ACKR2O00590 384 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 PTGESO14684 152 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 N4BP1O75113 896 aaKnown RBP14.07□□□□□ -0.16
CD44-203ENST00000278386 EDN1P05305 212 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 TRAPPC10P48553 1259 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 RBM25P49756 843 aaKnown RBP14.07□□□□□ -0.16
CD44-203ENST00000278386 PSMD5Q16401 504 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 DCAF4L1Q3SXM0 396 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 RTP2Q5QGT7 225 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 LIN9Q5TKA1 542 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 FAM171A1Q5VUB5 890 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 EEF1DP3Q658K8 133 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 CWF19L1Q69YN2 538 aaKnown RBP14.07□□□□□ -0.16
CD44-203ENST00000278386 FBXO18Q8NFZ0 1043 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 SNX29Q8TEQ0 813 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 ZSCAN31Q96LW9 406 aaPredicted RBP14.07□□□□□ -0.16
CD44-203ENST00000278386 TTPALQ9BTX7 342 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 CCDC113Q9H0I3 377 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 BHMT2Q9H2M3 363 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 SH2B1Q9NRF2 756 aaPredicted RBP14.07□□□□□ -0.16
CD44-203ENST00000278386 ZDHHC7Q9NXF8 308 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 IGSF9Q9P2J2 1179 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 LRWD1Q9UFC0 647 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 MIA3Q5JRA6 1907 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 MYO15AQ9UKN7 3530 aa14.07□□□□□ -0.16
CD44-203ENST00000278386 NARSO43776 548 aaKnown RBP14.06□□□□□ -0.16
CD44-203ENST00000278386 MUTP22033 750 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 FXR2P51116 673 aaKnown RBP eCLIP14.06□□□□□ -0.16
CD44-203ENST00000278386 ECM1Q16610 540 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 GLRA4Q5JXX5 417 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 APBB1IPQ7Z5R6 666 aaPredicted RBP14.06□□□□□ -0.16
CD44-203ENST00000278386 GPR65Q8IYL9 337 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 SIX5Q8N196 739 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 RSAD2Q8WXG1 361 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 KIFAP3Q92845 792 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 ZNF707Q96C28 371 aaPredicted RBP14.06□□□□□ -0.16
CD44-203ENST00000278386 MYADMQ96S97 322 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 RHOBTB2Q9BYZ6 727 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 RAB34Q9BZG1 259 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 NT5C3AQ9H0P0 336 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 POLD4Q9HCU8 107 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 DDX19AQ9NUU7 478 aaKnown RBP14.06□□□□□ -0.16
CD44-203ENST00000278386 KIAA1024Q9UPX6 916 aa14.06□□□□□ -0.16
CD44-203ENST00000278386 STK25O00506 426 aa14.05□□□□□ -0.16
CD44-203ENST00000278386 CFHP08603 1231 aa14.05□□□□□ -0.16
CD44-203ENST00000278386 CLCN5P51795 746 aa14.05□□□□□ -0.16
CD44-203ENST00000278386 EFNA5P52803 228 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms