RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 ZSWIM5Q9P217 1185 aa8.42□□□□□ -1.06
LIMD1-201ENST00000273317 SRGAP2O75044 1071 aa8.42□□□□□ -1.06
LIMD1-201ENST00000273317 USP17L8P0C7I0 530 aa8.42□□□□□ -1.06
LIMD1-201ENST00000273317 OCM2P0CE71 109 aa8.42□□□□□ -1.06
LIMD1-201ENST00000273317 OCMP0CE72 109 aaPredicted RBP8.42□□□□□ -1.06
LIMD1-201ENST00000273317 UBXN2AP68543 259 aa8.42□□□□□ -1.06
LIMD1-201ENST00000273317 KRT17Q04695 432 aa8.42□□□□□ -1.06
LIMD1-201ENST00000273317 CUL3Q13618 768 aa8.42□□□□□ -1.06
LIMD1-201ENST00000273317 DOK7Q18PE1 504 aa8.42□□□□□ -1.06
LIMD1-201ENST00000273317 TEX2Q8IWB9 1127 aa8.42□□□□□ -1.06
LIMD1-201ENST00000273317 OPTNQ96CV9 577 aa8.42□□□□□ -1.06
LIMD1-201ENST00000273317 ABCF3Q9NUQ8 709 aa8.42□□□□□ -1.06
LIMD1-201ENST00000273317 PMS1P54277 932 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 KCNA1Q09470 495 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 ZNF568Q3ZCX4 644 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 DEPDC1Q5TB30 811 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 GANCQ8TET4 914 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 NR1H4Q96RI1 486 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 ZNF341Q9BYN7 854 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 PRKAG2Q9UGJ0 569 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 ATP11BQ9Y2G3 1177 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 HEY1Q9Y5J3 304 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 NEDD4P46934 1319 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 PI4K2BG5E9Z4 385 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 MEFVO15553 781 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 PJA2O43164 708 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 USP11P51784 963 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 KLC1Q07866 573 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 WASHC5Q12768 1159 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 STAG2Q8N3U4 1231 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 EGFL8Q99944 293 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 PUS3Q9BZE2 481 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 MAD2L2Q9UI95 211 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 GDAQ9Y2T3 454 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 FARP1Q9Y4F1 1045 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CDY2AQ9Y6F7 541 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CDY1Q9Y6F8 540 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 ASNSP08243 561 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 C4BPBP20851 252 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 TOB2Q14106 344 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 STILQ15468 1287 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 RANBP17Q9H2T7 1088 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 FBXO2Q9UK22 296 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 FNDC3AQ9Y2H6 1198 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 SUGT1Q9Y2Z0 365 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 LRRIQ1Q96JM4 1722 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CYLC2Q14093 348 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 SLC27A3Q5K4L6 730 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CATSPER3Q86XQ3 398 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 PCYOX1LQ8NBM8 494 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 OSBP2Q969R2 916 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 NLRP4Q96MN2 994 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CCDC90BQ9GZT6 254 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 PCDHGB4Q9UN71 923 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 HNRNPCP07910 306 aaKnown RBP eCLIP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 MRPS35P82673 323 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 DMC1Q14565 340 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 KHDRBS2Q5VWX1 349 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 C4orf22Q6V702 233 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 ZNF556Q9HAH1 456 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 ZNF302Q9NR11 478 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 DDX28Q9NUL7 540 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 ABCC3O15438 1527 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 KCNQ3O43525 872 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 KCNA2P16389 499 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CYP2C19P33261 490 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 MDH1P40925 334 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 ARSEP51690 589 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 DYNLL1P63167 89 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 USP17L2Q6R6M4 530 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 RNPC3Q96LT9 517 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 ABCA6Q8N139 1617 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 VIRMAQ69YN4 1812 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CDHR2Q9BYE9 1310 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CDH16O75309 829 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 FTLP02792 175 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CDK17Q00537 523 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 PROSER3Q2NL68 480 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CENPPQ6IPU0 288 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 SLC30A9Q6PML9 568 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 LY9Q9HBG7 655 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 TUFT1Q9NNX1 390 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 ITM2BQ9Y287 266 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 USP17L5A8MUK1 530 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 APBA3O96018 575 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CDC27P30260 824 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 HOXA13P31271 388 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 STAT3P40763 770 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 SNRPFP62306 86 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 PRAMEP78395 509 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 RUNX1T1Q06455 604 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 RAPGEF5Q92565 580 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 FRMD8Q9BZ67 464 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 RUBCNLQ9H714 662 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 ZNF711Q9Y462 761 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 TYK2P29597 1187 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 CLEC4GQ6UXB4 293 aa8.41□□□□□ -1.06
LIMD1-201ENST00000273317 FASTKD5Q7L8L6 764 aaKnown RBP8.41□□□□□ -1.06
LIMD1-201ENST00000273317 RTKN2Q8IZC4 609 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms