RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 SHISA5Q8N114 240 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 CD99L2Q8TCZ2 262 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 JDP2Q8WYK2 163 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 SHC3Q92529 594 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 NDRG1Q92597 394 aaKnown RBP6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 GPRASP2Q96D09 838 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 CDT1Q9H211 546 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 TLR9Q9NR96 1032 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 HMX2A2RU54 273 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 F8VZ95 297 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 ATP2C2O75185 946 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 TTC30AQ86WT1 665 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 C12orf29Q8N999 325 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 SEC14L1Q92503 715 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 CWH43Q9H720 699 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 NDFIP2Q9NV92 336 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 SKILP12757 684 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 PBX3P40426 434 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 CDH8P55286 799 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 PTENP60484 403 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 ACVR2BQ13705 512 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 SURF1Q15526 300 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 MTHFD1LQ6UB35 978 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 FAM71AQ8IYT1 594 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 TRIM44Q96DX7 344 aaPredicted RBP6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 UNC93B1Q9H1C4 597 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 SETD4Q9NVD3 440 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 CAPN11Q9UMQ6 739 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 TBX20Q9UMR3 447 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 NOC2LQ9Y3T9 749 aaKnown RBP6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 H0YGN5 161 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 IGLV3-25P01717 112 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 MRPL58Q14197 206 aaKnown RBP6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 SPATA1Q5VX52 437 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 SAAL1Q96ER3 474 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 CPB2Q96IY4 423 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 CAPNS2Q96L46 248 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 LZTS2Q9BRK4 669 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 TRIM56Q9BRZ2 755 aaKnown RBP6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 NOD1Q9Y239 953 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 NFS1Q9Y697 457 aa6.23□□□□□ -1.41
TOPBP1-201ENST00000260810 PIRO00625 290 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 SSTR3P32745 418 aaPredicted RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 RTP1P59025 263 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ZNF746Q6NUN9 644 aaPredicted RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 SH2D5Q6ZV89 423 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 PLPPR4Q7Z2D5 763 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 TARS2Q9BW92 718 aaKnown RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ADAM7Q9H2U9 754 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 GINM1Q9NU53 330 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 PVALEFA0A1B0GWK0 134 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 hCG_1984214I3L0E3 225 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 N4BP1O75113 896 aaKnown RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 HUNKP57058 714 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 RPL7AP62424 266 aaKnown RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 LAMTOR4Q0VGL1 99 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 RNF43Q68DV7 783 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ZNF713Q8N859 430 aaPredicted RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 OR10T2Q8NGX3 314 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 PPP1R13BQ96KQ4 1090 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 CTNND2Q9UQB3 1225 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ZKSCAN5Q9Y2L8 839 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 CHD8Q9HCK8 2581 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 SLC16A4O15374 487 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 KLRC1P26715 233 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ERCC5P28715 1186 aaPredicted RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ORC1Q13415 861 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 IRF5Q13568 498 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 SOWAHAQ2M3V2 549 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ATP13A4Q4VNC1 1196 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ZNF534Q76KX8 674 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 CCAR2Q8N163 923 aaKnown RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ZNF687Q8N1G0 1237 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 CTCFLQ8NI51 663 aaPredicted RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 EZH1Q92800 747 aaPredicted RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ELOVL4Q9GZR5 314 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 GGPS1O95749 300 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 PRKCIP41743 596 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 MRPS25P82663 173 aaKnown RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 EAPPQ56P03 285 aaPredicted RBP6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 FIGNQ5HY92 759 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 AMOTL1Q8IY63 956 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 OGFOD1Q8N543 542 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 LRRN4Q8WUT4 740 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ANKRD7Q92527 254 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 LMLNQ96KR4 655 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ZNF577Q9BSK1 485 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 ACAD9Q9H845 621 aa6.22□□□□□ -1.41
TOPBP1-201ENST00000260810 GRID2IPA4D2P6 1211 aa6.21□□□□□ -1.41
TOPBP1-201ENST00000260810 CYP1A1P04798 512 aaPredicted RBP6.21□□□□□ -1.41
TOPBP1-201ENST00000260810 APLP1P51693 650 aa6.21□□□□□ -1.41
TOPBP1-201ENST00000260810 SLC10A2Q12908 348 aaPredicted RBP6.21□□□□□ -1.41
TOPBP1-201ENST00000260810 MAP2K5Q13163 448 aa6.21□□□□□ -1.41
TOPBP1-201ENST00000260810 UAP1Q16222 522 aaPredicted RBP6.21□□□□□ -1.41
TOPBP1-201ENST00000260810 TMEM266Q2M3C6 531 aa6.21□□□□□ -1.41
TOPBP1-201ENST00000260810 TNFAIP8L3Q5GJ75 292 aa6.21□□□□□ -1.41
TOPBP1-201ENST00000260810 LRCH2Q5VUJ6 765 aa6.21□□□□□ -1.41
TOPBP1-201ENST00000260810 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.21□□□□□ -1.412e-7■■■■□ 23.8
TOPBP1-201ENST00000260810 ZNF662Q6ZS27 426 aa6.21□□□□□ -1.41
TOPBP1-201ENST00000260810 KRT25Q7Z3Z0 450 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms