RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 HYIQ5T013 277 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 CYP39A1Q9NYL5 469 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 GIPC1O14908 333 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 LRRN2O75325 713 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 NCOA4Q13772 614 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 ZNF467Q7Z7K2 595 aaPredicted RBP14.56□□□□□ -0.08
LDLR-201ENST00000252444 RHOT1Q8IXI2 618 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 ZNF507Q8TCN5 953 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 BTAF1O14981 1849 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 GIT2Q14161 759 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 DEFB115Q30KQ5 88 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 TMEM270Q6UE05 265 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 USP38Q8NB14 1042 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 AGPAT3Q9NRZ7 376 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 TRAF3IP3Q9Y228 551 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 NRCAMQ92823 1304 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 FAM187AA6NFU0 413 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 A8MXQ7 604 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 ICAM3P32942 547 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 OTOP1Q7RTM1 612 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 FOXP3Q9BZS1 431 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 HMX1Q9NP08 348 aaPredicted RBP14.56□□□□□ -0.08
LDLR-201ENST00000252444 FAM217BQ9NTX9 383 aaPredicted RBP14.56□□□□□ -0.08
LDLR-201ENST00000252444 ZNF148Q9UQR1 794 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 CFAP69A5D8W1 941 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 LSM8O95777 96 aaKnown RBP14.56□□□□□ -0.08
LDLR-201ENST00000252444 CELF3Q5SZQ8 465 aaKnown RBP14.56□□□□□ -0.08
LDLR-201ENST00000252444 KLHL7Q8IXQ5 586 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 CCT6BQ92526 530 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 NFIBO00712 420 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 HEXIM1O94992 359 aaKnown RBP14.56□□□□□ -0.08
LDLR-201ENST00000252444 CHGBP05060 677 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 IFRD2Q12894 506 aaPredicted RBP14.56□□□□□ -0.08
LDLR-201ENST00000252444 PIGHQ14442 188 aaPredicted RBP14.56□□□□□ -0.08
LDLR-201ENST00000252444 NR1I3Q14994 352 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 MUM1L1Q5H9M0 696 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 EFHC2Q5JST6 749 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 SPATA2LQ8IUW3 424 aaPredicted RBP14.56□□□□□ -0.08
LDLR-201ENST00000252444 STKLD1Q8NE28 680 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 REPS2Q8NFH8 660 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 TRPV2Q9Y5S1 764 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 TAF6LQ9Y6J9 622 aa14.56□□□□□ -0.08
LDLR-201ENST00000252444 PAPPAQ13219 1627 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 M0QYV0 167 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 TOB1P50616 345 aaPredicted RBP14.55□□□□□ -0.08
LDLR-201ENST00000252444 IQCB1Q15051 598 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 SPATS2Q86XZ4 545 aaKnown RBP14.55□□□□□ -0.08
LDLR-201ENST00000252444 PDLIM2Q96JY6 352 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 TTC25Q96NG3 672 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 NT5C1AQ9BXI3 368 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 PPCSQ9HAB8 311 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 A1CFQ9NQ94 594 aaKnown RBP14.55□□□□□ -0.08
LDLR-201ENST00000252444 SCN7AQ01118 1682 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 A0A0G2JLL6 359 aaPredicted RBP14.55□□□□□ -0.08
LDLR-201ENST00000252444 MAP1SQ66K74 1059 aaPredicted RBP14.55□□□□□ -0.08
LDLR-201ENST00000252444 PRRT2Q7Z6L0 340 aaPredicted RBP14.55□□□□□ -0.08
LDLR-201ENST00000252444 CCDC97Q96F63 343 aaPredicted RBP14.55□□□□□ -0.08
LDLR-201ENST00000252444 TINF2Q9BSI4 451 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 TRIM49BA6NDI0 452 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 SPATA31C2B4DYI2 1134 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 FBXO21O94952 628 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 CD58P19256 250 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 MFSD10Q14728 455 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 ARHGEF18Q6ZSZ5 1173 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 TMEM143Q96AN5 459 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 CFAP57Q96MR6 1250 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 FAM205CA6NFA0 338 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 SPDYE16A6NNV3 312 aaPredicted RBP14.55□□□□□ -0.08
LDLR-201ENST00000252444 YDJCA8MPS7 323 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 I3L4J1 428 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 NPTXRO95502 500 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 PSEN2P49810 448 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 OSTNP61366 133 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 RBM10P98175 930 aaKnown RBP14.55□□□□□ -0.08
LDLR-201ENST00000252444 KRT17Q04695 432 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 IRF5Q13568 498 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 B4GALNT4Q76KP1 1039 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 SLITRK6Q9H5Y7 841 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 RRN3Q9NYV6 651 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 ZNF541Q9H0D2 1346 aa14.55□□□□□ -0.08
LDLR-201ENST00000252444 PPP1R3GB7ZBB8 358 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 BUB1O43683 1085 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 MED24O75448 989 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 ARP10275 920 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 SLC2A3P11169 496 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 PAMP19021 973 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 POU5F1Q01860 360 aaKnown RBP14.54□□□□□ -0.08
LDLR-201ENST00000252444 EFHC1Q5JVL4 640 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 AFAP1L1Q8TED9 768 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 FTHL17Q9BXU8 183 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 ZNF135P52742 658 aaPredicted RBP14.54□□□□□ -0.08
LDLR-201ENST00000252444 SLC35F6Q8N357 371 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 TRPM4Q8TD43 1214 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 SELENOSQ9BQE4 189 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 OXCT2Q9BYC2 517 aaPredicted RBP14.54□□□□□ -0.08
LDLR-201ENST00000252444 PCDHB8Q9UN66 801 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 GLI3P10071 1580 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 TFRCP02786 760 aaKnown RBP14.54□□□□□ -0.08
LDLR-201ENST00000252444 EHHADHQ08426 723 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 NR1H3Q13133 447 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 584 ms