RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 MOV10L1Q9BXT6 1211 aaKnown RBP13.53□□□□□ -0.24
USP40-201ENST00000251722 WNT8AQ9H1J5 351 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 PLEKHA4Q9H4M7 779 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 FSD1LQ9BXM9 530 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 POLIQ9UNA4 740 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 PCSK1P29120 753 aa13.52□□□□□ -0.24
USP40-201ENST00000251722 GNA15P30679 374 aa13.52□□□□□ -0.24
USP40-201ENST00000251722 KLHL38Q2WGJ6 581 aa13.52□□□□□ -0.24
USP40-201ENST00000251722 TBC1D19Q8N5T2 526 aa13.52□□□□□ -0.24
USP40-201ENST00000251722 SLC44A5Q8NCS7 719 aa13.52□□□□□ -0.24
USP40-201ENST00000251722 PAPOLBQ9NRJ5 636 aaKnown RBP13.52□□□□□ -0.24
USP40-201ENST00000251722 KLHL8Q9P2G9 620 aaPredicted RBP13.52□□□□□ -0.24
USP40-201ENST00000251722 POTECB2RU33 542 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 E9PMD0 336 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 KRT38O76015 456 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 ESRRBO95718 433 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 GLB1LQ6UWU2 654 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 PCSK9Q8NBP7 692 aaKnown RBP13.52□□□□□ -0.25
USP40-201ENST00000251722 EPAS1Q99814 870 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 hCG_2014768A0A024R1R8 64 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 CELF2O95319 508 aaKnown RBP13.52□□□□□ -0.25
USP40-201ENST00000251722 CCDC159P0C7I6 412 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 C6orf118Q5T5N4 469 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 TMEM270Q6UE05 265 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 APPL2Q8NEU8 664 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 CCDC124Q96CT7 223 aaKnown RBP13.52□□□□□ -0.25
USP40-201ENST00000251722 DEFB129Q9H1M3 183 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 ZWILCHQ9H900 591 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 PARVAQ9NVD7 372 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 GDAQ9Y2T3 454 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 MEFVO15553 781 aaPredicted RBP13.52□□□□□ -0.25
USP40-201ENST00000251722 PLS3P13797 630 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 KCNH2Q12809 1159 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 SH3GL2Q99962 352 aa13.52□□□□□ -0.25
USP40-201ENST00000251722 SLC26A2P50443 739 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 BAATQ14032 418 aaPredicted RBP13.51□□□□□ -0.25
USP40-201ENST00000251722 ZNF484Q5JVG2 852 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 AFG1LQ8WV93 481 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 RUBCNQ92622 972 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 PPP1R16BQ96T49 567 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 TRIM15Q9C019 465 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 SP110Q9HB58 689 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 PIN4Q9Y237 131 aaKnown RBP13.51□□□□□ -0.25
USP40-201ENST00000251722 ZNF609O15014 1411 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 KPNA7A9QM74 516 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 ATP5HO75947 161 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 BAG2O95816 211 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 TSTA3Q13630 321 aaPredicted RBP13.51□□□□□ -0.25
USP40-201ENST00000251722 SGSM1Q2NKQ1 1148 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 ZNF746Q6NUN9 644 aaPredicted RBP13.51□□□□□ -0.25
USP40-201ENST00000251722 PIP4K2CQ8TBX8 421 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 PYROXD1Q8WU10 500 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 MIEF2Q96C03 454 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 INTS9Q9NV88 658 aaKnown RBP13.51□□□□□ -0.25
USP40-201ENST00000251722 PRR12Q9ULL5 1215 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 KIDINS220Q9ULH0 1771 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 ITGA4P13612 1032 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 SAT1P21673 171 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 HSD17B4P51659 736 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 KLC1Q07866 573 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 BFSP2Q13515 415 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 FAF2Q96CS3 445 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 GLT1D1Q96MS3 346 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 MXRA8Q9BRK3 442 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 TRIM54Q9BYV2 358 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 NRDE2Q9H7Z3 1164 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 H7C4K7 107 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 SUPT20HL2P0C7V6 817 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 SMYD4Q8IYR2 804 aaPredicted RBP13.51□□□□□ -0.25
USP40-201ENST00000251722 DAGLBQ8NCG7 672 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 ASAP3Q8TDY4 903 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 MRPL40Q9NQ50 206 aaKnown RBP13.51□□□□□ -0.25
USP40-201ENST00000251722 ORC6Q9Y5N6 252 aa13.51□□□□□ -0.25
USP40-201ENST00000251722 ANKRD65E5RJM6 399 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 RPS6KA5O75582 802 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 EXOSC10Q01780 885 aaKnown RBP13.5□□□□□ -0.25
USP40-201ENST00000251722 ARHGAP15Q53QZ3 475 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 SYDE1Q6ZW31 735 aaPredicted RBP13.5□□□□□ -0.25
USP40-201ENST00000251722 ZDHHC15Q96MV8 337 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 MKNK1Q9BUB5 465 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 PHF20Q9BVI0 1012 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 ANAPC7Q9UJX3 599 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 SLC13A4Q9UKG4 626 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 PTPN22Q9Y2R2 807 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 PITPNM2Q9BZ72 1349 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 POC1B-GALNT4F8VUJ3 575 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 CTIFO43310 598 aaKnown RBP13.5□□□□□ -0.25
USP40-201ENST00000251722 CDC27P30260 824 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 KRT17Q04695 432 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 DHX9Q08211 1270 aaKnown RBP13.5□□□□□ -0.25
USP40-201ENST00000251722 ANO4Q32M45 955 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 ANKRD20A4Q4UJ75 823 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 ANKRD20A8PQ5CZ79 823 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 ANKRD20A2Q5SQ80 823 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 ANKRD20A1Q5TYW2 823 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 C11orf57Q6ZUT1 292 aaPredicted RBP13.5□□□□□ -0.25
USP40-201ENST00000251722 RHOT1Q8IXI2 618 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 RNF149Q8NC42 400 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 SAMSN1Q9NSI8 373 aaKnown RBP13.5□□□□□ -0.25
USP40-201ENST00000251722 FAM217BQ9NTX9 383 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms